Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX74440 | Canola | nucleus | 75.71 | 81.6 |
| CDY30261 | Canola | nucleus | 78.34 | 81.36 |
| Bra025655.1-P | Field mustard | nucleus | 78.77 | 80.9 |
| Bra028437.1-P | Field mustard | nucleus | 69.37 | 79.25 |
| CDY37010 | Canola | nucleus | 67.61 | 79.23 |
| CDX67434 | Canola | nucleus | 72.43 | 78.25 |
| AT5G62430.1 | Thale cress | nucleus | 30.42 | 46.64 |
| AT2G34140.1 | Thale cress | nucleus | 15.32 | 41.18 |
| AT1G29160.1 | Thale cress | nucleus | 15.54 | 40.57 |
| KRH01188 | Soybean | nucleus | 42.89 | 39.12 |
| KRH40083 | Soybean | nucleus | 42.45 | 38.57 |
| Solyc05g007880.2.1 | Tomato | nucleus | 35.01 | 36.28 |
| PGSC0003DMT400047370 | Potato | nucleus | 35.01 | 36.2 |
| AT3G47500.1 | Thale cress | nucleus | 32.82 | 33.48 |
| GSMUA_Achr11P... | Banana | nucleus | 34.14 | 33.48 |
| AT1G69570.1 | Thale cress | nucleus | 27.35 | 31.33 |
| AT1G26790.1 | Thale cress | nucleus, plastid | 25.16 | 30.91 |
| AT3G21270.1 | Thale cress | nucleus | 12.04 | 26.96 |
| AT1G47655.1 | Thale cress | nucleus | 12.04 | 26.32 |
| AT1G51700.1 | Thale cress | nucleus | 10.72 | 25.26 |
| AT4G38000.1 | Thale cress | nucleus, plastid | 13.57 | 25.2 |
| AT5G66940.1 | Thale cress | nucleus | 11.82 | 24.0 |
| AT3G50410.1 | Thale cress | nucleus | 13.13 | 23.72 |
Protein Annotations
| MapMan:15.5.1.5 | EntrezGene:833962 | ProteinID:AED94460.1 | ProteinID:AED94461.1 | ProteinID:ANM69712.1 | ArrayExpress:AT5G39660 |
| EnsemblPlantsGene:AT5G39660 | RefSeq:AT5G39660 | TAIR:AT5G39660 | RefSeq:AT5G39660-TAIR-G | EnsemblPlants:AT5G39660.1 | TAIR:AT5G39660.1 |
| EMBL:AY056804 | ProteinID:BAB08898.1 | EMBL:BT015791 | Symbol:CDF2 | GO:GO:0000003 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
| GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009791 | GO:GO:0009908 |
| GO:GO:0009987 | GO:GO:0043565 | GO:GO:0046872 | InterPro:IPR003851 | RefSeq:NP_001318708.1 | RefSeq:NP_568567.1 |
| RefSeq:NP_851106.1 | PFAM:PD007478 | PFAM:PF02701 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 |
| PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 |
| PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007115 | PO:PO:0007123 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009009 | PO:PO:0009010 |
| PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 |
| PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 |
| PO:PO:0025195 | PO:PO:0025281 | ScanProsite:PS01361 | PFscan:PS50884 | PANTHER:PTHR31089 | UniProt:Q93ZL5 |
| UniParc:UPI00001627C1 | InterPro:Znf_Dof | SEG:seg | : | : | : |
Description
CDF2Cyclic dof factor 2 [Source:UniProtKB/Swiss-Prot;Acc:Q93ZL5]
Coordinates
chr5:+:15878698..15881400
Molecular Weight (calculated)
49810.6 Da
IEP (calculated)
4.939
GRAVY (calculated)
-0.817
Length
457 amino acids
Sequence
(BLAST)
(BLAST)
001: MADPAIKLFG KTIPLPELGV VDSSSSYTGF LTETQIPVRL SDSCTGDDDD EEMGDSGLGR EEGDDVGDGG GESETDKKEE KDSECQEESL RNESNDVTTT
101: TSGITEKTET TKAAKTNEES GGTACSQEGK LKKPDKILPC PRCNSMETKF CYYNNYNVNQ PRHFCKKCQR YWTAGGTMRN VPVGAGRRKN KSPASHYNRH
201: VSITSAEAMQ KVARTDLQHP NGANLLTFGS DSVLCESMAS GLNLVEKSLL KTQTVLQEPN EGLKITVPLN QTNEEAGTVS PLPKVPCFPG PPPTWPYAWN
301: GVSWTILPFY PPPAYWSCPG VSPGAWNSFT WMPQPNSPSG SNPNSPTLGK HSRDENAAEP GTAFDETESL GREKSKPERC LWVPKTLRID DPEEAAKSSI
401: WETLGIKKDE NADTFGAFRS STKEKSSLSE GRLPGRRPEL QANPAALSRS ANFHESS
101: TSGITEKTET TKAAKTNEES GGTACSQEGK LKKPDKILPC PRCNSMETKF CYYNNYNVNQ PRHFCKKCQR YWTAGGTMRN VPVGAGRRKN KSPASHYNRH
201: VSITSAEAMQ KVARTDLQHP NGANLLTFGS DSVLCESMAS GLNLVEKSLL KTQTVLQEPN EGLKITVPLN QTNEEAGTVS PLPKVPCFPG PPPTWPYAWN
301: GVSWTILPFY PPPAYWSCPG VSPGAWNSFT WMPQPNSPSG SNPNSPTLGK HSRDENAAEP GTAFDETESL GREKSKPERC LWVPKTLRID DPEEAAKSSI
401: WETLGIKKDE NADTFGAFRS STKEKSSLSE GRLPGRRPEL QANPAALSRS ANFHESS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.