CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH41120
KRH41723
KRH59806
KRH60424

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G39660.1	KRH41723	AT1G68050.1	16002617
AT5G39660.1	KRH60424	AT1G68050.1	16002617
AT5G39660.1	KRH41120	AT5G50680.1	21798944
AT5G39660.1	KRH59806	AT5G50680.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH40083	Soybean	nucleus	93.61	93.24
KRH18471	Soybean	nucleus	63.27	64.96
KRG93541	Soybean	nucleus	48.3	62.86
KRH03487	Soybean	nucleus	52.1	55.41
KRH56903	Soybean	nucleus	51.7	54.76
KRH63324	Soybean	nucleus	49.5	52.77
KRH54567	Soybean	nucleus	47.9	52.4
PGSC0003DMT400047370	Potato	nucleus	45.71	51.81
KRH74885	Soybean	nucleus	48.9	51.15
Solyc05g007880.2.1	Tomato	nucleus	44.71	50.79
KRH70746	Soybean	nucleus, plastid	48.3	49.9
KRH42862	Soybean	nucleus	7.58	48.72
KRH50577	Soybean	nucleus	46.31	48.43
KRG89621	Soybean	nucleus	45.91	47.72
KRH21283	Soybean	nucleus	13.17	44.9
CDX74440	Canola	nucleus	37.72	44.58
Bra028437.1-P	Field mustard	nucleus	35.33	44.25
KRH58964	Soybean	nucleus	14.57	44.24
CDY37010	Canola	nucleus	34.33	44.1
KRH11011	Soybean	nucleus	13.37	43.79
CDY30261	Canola	nucleus	38.12	43.41
Bra025655.1-P	Field mustard	nucleus	38.52	43.37
CDX67434	Canola	nucleus	36.33	43.03
AT5G39660.1	Thale cress	nucleus	39.12	42.89
GSMUA_Achr11P...	Banana	nucleus	38.52	41.42
KRG94921	Soybean	nucleus	37.52	38.92
KRH64974	Soybean	nucleus	35.73	38.83
KRH44749	Soybean	nucleus	29.14	33.64
KRH13096	Soybean	nucleus, vacuole	30.14	32.4
KRH09992	Soybean	nucleus	13.17	31.28
KRH70017	Soybean	nucleus	14.37	30.77
KRH47156	Soybean	nucleus	12.77	30.33
KRH23341	Soybean	nucleus	12.77	30.19
KRH44186	Soybean	nucleus	12.77	30.05
KRH08373	Soybean	nucleus	13.57	28.81

Protein Annotations

EntrezGene:100788247	MapMan:15.5.1.5	EMBL:ACUP02011506	EnsemblPlantsGene:GLYMA_18G260500	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
UniProt:I1N4E5	InterPro:IPR003851	EnsemblPlants:KRH01188	ProteinID:KRH01188	ProteinID:KRH01188.1	PFAM:PD007478
PFAM:PF02701	ScanProsite:PS01361	PFscan:PS50884	PANTHER:PTHR31089	PANTHER:PTHR31089:SF7	UniParc:UPI000233F0F7
InterPro:Znf_Dof	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr18:+:54644926..54649126

Molecular Weight (calculated)

54275.6 Da

IEP (calculated)

6.728

GRAVY (calculated)

-0.826

Length

501 amino acids

Sequence
(BLAST)

001: MSEVKDPAIK LFGKTIPVPE IPRGSAGAPA SSSGDVVDDS VDASSTNSSR ESHTKRDALG KDVDKDTLGE KPTDDKKEDG APTQSSEEVT NLDTASGSCE
101: ESVALSTERE ATTLKTTKTE EEQSETSNSQ DKNLKKPDKI LPCPRCNSMD TKFCYYNNYN VNQPRHFCKN CQRYWTAGGT MRNVPVGAGR RKNKSSASHY
201: RQITVSEAAL QNPRTDLPNG AYHPSLKCNG TVLTFGTDTP LCESMASVLN LADKTMPNYT RNGFHKPEEL RIPVPHASGE KGDDQSNKSS VTSTTSVEGA
301: ITNGPKEQVV QNCQSFPPQV PYFPGTPWPI PWNPVQWSSP VPPPAFCPPG FTMPFYPATA YWGCAVPGTW NIPWLVQPSS PNGATPNSGP NSPTLGKHSR
401: EDSTFKSNES GGEDGHSKEN NKEKSLWVPK TLRIDDSEAA KSSIWATLGI KNDKADSVPG GTLFKAFPSK HDDKNHSMQA SPVLQANPAA LSRSLNFHET
501: S

Best Arabidopsis Sequence Match ( AT5G39660.3 )
(BLAST)

001: MADPAIKLFG KTIPLPELGV VDSSSSYTGF LTETQIPVRL SDSCTGDDDD EEMGDSGLGR EEGDDVGDGG GESETDKKEE KDSECQEESL RNESNDVTTT
101: TSGITEKTET TKAAKTNEES GGTACSQEGK LKKPDKILPC PRCNSMETKF CYYNNYNVNQ PRHFCKKCQR YWTAGGTMRN VPVGAGRRKN KSPASHYNRH
201: VSITSAEAMQ KVARTDLQHP NGANLLTFGS DSVLCESMAS GLNLVEKSLL KTQTVLQEPN EGLKITVPLN QTNEEAGTVS PLPKVPCFPG PPPTWPYAWN
301: GVSWTILPFY PPPAYWSCPG VSPGAWNSFT WMPQPNSPSG SNPNSPTLGK HSRDENAAEP GTAFDETESL GREKSKPERC LWVPKTLRID DPEEAAKSSI
401: WETLGIKKDE NADTFGAFRS STKEKSSLSE GRLPGRRPEL QANPAALSRS ANFHESS

Arabidopsis Description

CDF2Cyclic dof factor 2 [Source:UniProtKB/Swiss-Prot;Acc:Q93ZL5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.