Factsheet for GSMUA_Achr9P05020_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 26889012

gfp PMID: 26889012 doi

BH Feng, YC Han, YY Xiao, JF Kuang, ZQ Fan, JY Chen, WJ Lu

State Key Laboratory for Conservation and Utilization of Subtropical Agro-bioresources/Guangdong Key Laboratory for Postharvest Science, College of Horticultural Science, South China Agricultural University, Guangzhou 510642, PR China College of Agriculture, GuangXi University, Nanning 530004, PR China., State Key Laboratory for Conservation and Utilization of Subtropical Agro-bioresources/Guangdong Key Laboratory for Postharvest Science, College of Horticultural Science, South China Agricultural University, Guangzhou 510642, PR China wjlu@scau.edu.cn., State Key Laboratory for Conservation and Utilization of Subtropical Agro-bioresources/Guangdong Key Laboratory for Postharvest Science, College of Horticultural Science, South China Agricultural University, Guangzhou 510642, PR China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr5P07660_001	Banana	nucleus	61.89	67.22
GSMUA_Achr11P...	Banana	nucleus	73.17	57.01
GSMUA_Achr6P32240_001	Banana	nucleus	59.15	49.87
GSMUA_Achr11P...	Banana	nucleus	35.98	48.76
GSMUA_Achr2P09110_001	Banana	nucleus	16.16	44.54
GSMUA_Achr4P15140_001	Banana	nucleus	20.12	44.3
GSMUA_Achr6P10720_001	Banana	nucleus	36.59	43.96
GSMUA_Achr4P08020_001	Banana	nucleus	19.21	41.72
GSMUA_Achr2P22000_001	Banana	nucleus	44.82	38.89
GSMUA_Achr10P...	Banana	nucleus	41.77	38.38
GSMUA_Achr9P06430_001	Banana	nucleus	17.68	37.66
TraesCS3D01G185500.2	Wheat	nucleus	61.28	37.36
EES02731	Sorghum	nucleus	63.72	37.32
TraesCS3A01G180600.1	Wheat	nucleus	61.28	37.29
TraesCS3B01G210300.1	Wheat	nucleus	61.28	37.29
GSMUA_Achr2P11520_001	Banana	nucleus	52.44	36.99
GSMUA_Achr11P...	Banana	nucleus	52.13	36.7
GSMUA_Achr3P01850_001	Banana	nucleus	37.8	35.84
Zm00001d040362_P001	Maize	nucleus	61.89	35.49
Os01t0264000-01	Rice	nucleus	50.61	33.47
Bra024683.1-P	Field mustard	nucleus	32.01	32.11
CDY16193	Canola	nucleus	32.01	32.11
KRH74885	Soybean	nucleus	46.65	31.94
KRH70746	Soybean	nucleus, plastid	46.65	31.55
CDX95919	Canola	nucleus	34.76	30.98
KRH50577	Soybean	nucleus	45.12	30.9
KRG89621	Soybean	nucleus	45.12	30.71
CDY01768	Canola	nucleus	34.15	30.43
CDY72477	Canola	nucleus	33.84	30.16
Bra004396.1-P	Field mustard	nucleus	33.84	30.16
CDY44994	Canola	nucleus	24.7	30.0
CDY67869	Canola	nucleus	34.45	29.35
CDY07344	Canola	nucleus	34.15	29.02
Bra003994.1-P	Field mustard	nucleus	34.15	29.02
AT1G69570.1	Thale cress	nucleus	35.06	28.82
GSMUA_Achr7P09590_001	Banana	nucleus	17.07	28.57
AT1G26790.1	Thale cress	nucleus, plastid	32.32	28.49
CDY50735	Canola	extracellular	31.1	28.02
CDY46443	Canola	nucleus	28.35	27.76
Bra016286.1-P	Field mustard	nucleus	28.35	27.76
GSMUA_Achr10P...	Banana	nucleus	18.29	26.32
GSMUA_Achr2P15700_001	Banana	nucleus	17.68	25.89
GSMUA_Achr4P30860_001	Banana	nucleus	18.29	25.64
GSMUA_Achr2P13350_001	Banana	nucleus	17.99	25.43
CDY50734	Canola	nucleus	20.43	24.72
GSMUA_Achr6P29500_001	Banana	nucleus	14.33	19.67

Protein Annotations

MapMan:15.5.1.5	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSMUA_Achr9G05020_001	EnsemblPlants:GSMUA_Achr9P05020_001	EnsemblPlants:GSMUA_Achr9T05020_001
InterPro:IPR003851	UniProt:M0TXL1	PFAM:PD007478	PFAM:PF02701	ScanProsite:PS01361	PFscan:PS50884
PANTHER:PTHR31089	PANTHER:PTHR31089:SF15	UniParc:UPI0002960ED9	InterPro:Znf_Dof	SEG:seg	:

Description

Putative Dof zinc finger protein DOF5.5 [Source:GMGC_GENE;Acc:GSMUA_Achr9G05020_001]

Coordinates

chr9:-:3264727..3269729

Molecular Weight (calculated)

35991.2 Da

IEP (calculated)

7.836

GRAVY (calculated)

-0.556

Length

328 amino acids

Sequence
(BLAST)

001: MSEVKDPAIK LFGATIPLPW EIRNSIEYFE VNYTKTEADC SVPEKVLKKP DKILPCPRCN SMDTKFCYYN NYNVNQPRHF CKNCQRYWTA GGTMRNVPVG
101: AGRRKSKDSD SGSMIHGEKR EEPSCASSAT ASNFVENGSA KTVVHVEQSG MQVYCNGLAP LPHLQCYPGA PWAYPWRPAW NNVAVMEAGK SHPFPFMPAP
201: FWGFTTWPNG AWNLPCVGSS GCISPSSSTS NSNCSGNGSP TLGKHSRDAS LQSEEKMEKS LWVPKTLRID DPEEAAKSSI WATLGIKPDI GGIFQSKAES
301: KVDESDAAQV LHANPAAVSR SHSFQEST

Best Arabidopsis Sequence Match ( AT5G62430.1 )
(BLAST)

001: MLETKDPAIK LFGMKIPFPT VLEVADEEEE KNQNKTLTDQ SEKDKTLKKP TKILPCPRCN SMETKFCYYN NYNVNQPRHF CKACQRYWTS GGTMRSVPIG
101: AGRRKNKNNS PTSHYHHVTI SETNGPVLSF SLGDDQKVSS NRFGNQKLVA RIENNDERSN NNTSNGLNCF PGVSWPYTWN PAFYPVYPYW SMPVLSSPVS
201: SSPTSTLGKH SRDEDETVKQ KQRNGSVLVP KTLRIDDPNE AAKSSIWTTL GIKNEVMFNG FGSKKEVKLS NKEETETSLV LCANPAALSR SINFHEQM

Arabidopsis Description

CDF1Cyclic dof factor 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8W1E3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.