Factsheet for Bra021895.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY37670	Canola	nucleus	99.4	99.4
CDY67393	Canola	nucleus	98.21	97.06
AT2G34140.1	Thale cress	nucleus	77.38	76.47
Bra030124.1-P	Field mustard	nucleus	46.43	63.93
Bra032292.1-P	Field mustard	nucleus	65.48	62.86
Bra010848.1-P	Field mustard	nucleus	64.29	61.71
KRH42862	Soybean	nucleus	27.38	58.97
VIT_10s0003g01260.t01	Wine grape	nucleus	53.57	56.6
KRH21283	Soybean	nucleus	44.64	51.02
KRH58964	Soybean	nucleus	49.4	50.3
KRH11011	Soybean	nucleus	43.45	47.71
Solyc02g076850.1.1	Tomato	nucleus	44.64	46.01
PGSC0003DMT400087458	Potato	nucleus	44.64	45.45
Bra031269.1-P	Field mustard	nucleus	26.79	23.56
Bra001822.1-P	Field mustard	nucleus	27.38	22.44
Bra023888.1-P	Field mustard	nucleus	26.19	22.0
Bra030423.1-P	Field mustard	nucleus	23.21	21.08
Bra029261.1-P	Field mustard	nucleus	35.12	20.21
Bra010082.1-P	Field mustard	nucleus	32.14	20.15
Bra037135.1-P	Field mustard	nucleus	24.4	19.34
Bra014297.1-P	Field mustard	nucleus	22.62	19.0
Bra036082.1-P	Field mustard	nucleus	25.0	18.92
Bra030010.1-P	Field mustard	nucleus	25.6	18.3
Bra012119.1-P	Field mustard	nucleus	23.21	17.73
Bra015609.1-P	Field mustard	nucleus	23.21	17.49
Bra011800.1-P	Field mustard	nucleus, plastid	25.0	17.36
Bra012901.1-P	Field mustard	nucleus	24.4	16.94
Bra024683.1-P	Field mustard	nucleus	32.74	16.82
Bra016286.1-P	Field mustard	nucleus	33.33	16.72
Bra028437.1-P	Field mustard	nucleus	36.9	15.5
Bra004396.1-P	Field mustard	nucleus	33.33	15.22
Bra003994.1-P	Field mustard	nucleus	33.93	14.77
Bra018141.1-P	Field mustard	nucleus	36.9	14.52
Bra025655.1-P	Field mustard	nucleus	36.9	13.93
TraesCS3D01G193100.1	Wheat	nucleus	38.69	13.66
TraesCS3A01G189600.1	Wheat	nucleus	38.1	13.45
Zm00001d040455_P001	Maize	nucleus	38.69	12.67
EES00579	Sorghum	nucleus	38.1	12.5
Os01t0277500-01	Rice	nucleus	41.07	12.45

Protein Annotations

MapMan:15.5.1.5	EnsemblPlantsGene:Bra021895	EnsemblPlants:Bra021895.1	EnsemblPlants:Bra021895.1-P	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0045892	GO:GO:1902455	InterPro:IPR003851	UniProt:M4DZE8	PFAM:PD007478	PFAM:PF02701
PFscan:PS50884	PANTHER:PTHR31089	PANTHER:PTHR31089:SF14	UniParc:UPI00025438B7	InterPro:Znf_Dof	SEG:seg

Description

AT2G34140 (E=4e-067) | Dof-type zinc finger domain-containing protein

Coordinates

chrA04:-:15084838..15085344

Molecular Weight (calculated)

18776.5 Da

IEP (calculated)

9.837

GRAVY (calculated)

-0.586

Length

168 amino acids

Sequence
(BLAST)

001: MATQDLQGIK LFGKTIACNV NITHKIKNED EKQPSDPTVR SSSLSDPTVE KRPDKIIACP RCKSMETKFC YFNNYNANQP RHFWKSCHRY WTAGGALRNV
101: PVGAGRRKTK PLARVVVGML GDGNEAHHVE LINGLLSHEL HSAAAARGGF RHDFSLKRLR CFSDGEPC

Best Arabidopsis Sequence Match ( AT2G34140.1 )
(BLAST)

001: MATQDSQGIK LFGKTIAFNT RTIKNEEETH PPEQEATIAV RSSSSSDLTA EKRPDKIIAC PRCKSMETKF CYFNNYNVNQ PRHFCKGCHR YWTAGGALRN
101: VPVGAGRRKS KPPGRVVVGM LGDGNGVRQV ELINGLLVEE WQHAAAAAHG SFRHDFPMKR LRCYSDGQSC

Arabidopsis Description

CDF4Cyclic dof factor 4 [Source:UniProtKB/Swiss-Prot;Acc:O22967]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.