Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc01g005300.2.1 | |
| Solyc03g115940.2.1 | |
| Solyc06g069760.2.1 | |
| Solyc09g010180.2.1 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400048370 | Potato | nucleus, plasma membrane, plastid | 72.92 | 96.38 |
| Solyc04g071990.2.1 | Tomato | cytosol | 80.21 | 80.21 |
| VIT_18s0157g00020.t01 | Wine grape | cytosol, peroxisome, plasma membrane | 77.12 | 76.92 |
| KRH35085 | Soybean | cytosol, nucleus, plasma membrane | 75.66 | 75.02 |
| KRG91704 | Soybean | cytosol | 75.58 | 74.87 |
| GSMUA_Achr10P... | Banana | cytosol, nucleus, peroxisome | 38.73 | 72.79 |
| KRH08640 | Soybean | cytosol | 67.1 | 71.57 |
| AT1G22770.1 | Thale cress | cytosol | 71.81 | 71.44 |
| PGSC0003DMT400002842 | Potato | plastid | 6.77 | 70.54 |
| Bra024536.1-P | Field mustard | cytosol, nucleus, plasma membrane | 70.44 | 70.2 |
| CDY21388 | Canola | cytosol, nucleus, plasma membrane | 70.35 | 70.11 |
| CDY04787 | Canola | cytosol, nucleus, plasma membrane | 70.09 | 69.91 |
| GSMUA_Achr7P09770_001 | Banana | cytosol | 67.61 | 69.45 |
| Os01t0182600-03 | Rice | nucleus | 68.29 | 68.71 |
| KXG31676 | Sorghum | nucleus | 67.61 | 67.9 |
| TraesCS3D01G118200.2 | Wheat | nucleus | 66.75 | 67.56 |
| TraesCS3B01G135400.1 | Wheat | cytosol, nucleus, plasma membrane | 66.84 | 67.53 |
| TraesCS3A01G116300.1 | Wheat | cytosol, nucleus, plasma membrane | 66.75 | 67.45 |
| GSMUA_Achr10P... | Banana | cytosol | 67.18 | 66.95 |
| Zm00001d039589_P136 | Maize | plasma membrane | 67.44 | 66.75 |
| Zm00001d008826_P078 | Maize | nucleus | 67.52 | 66.67 |
| HORVU3Hr1G021150.2 | Barley | cytosol | 14.05 | 65.6 |
| HORVU3Hr1G021140.2 | Barley | plastid | 52.96 | 63.25 |
| GSMUA_Achr10P... | Banana | cytosol, mitochondrion, nucleus, plastid | 21.68 | 63.25 |
Protein Annotations
| EnsemblPlants:Solyc12g056650.1.1 | EnsemblPlantsGene:Solyc12g056650.1 | GO:GO:0000003 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0009628 |
| GO:GO:0009791 | GO:GO:2000028 | InterPro:GIGANTEA | PANTHER:PTHR36319 | PRINTS:PR02081 | SEG:seg |
| UniParc:UPI000276A043 | UniProt:K4DFZ6 | MapMan:26.1.2.3.2 | : | : | : |
Description
No Description!
Coordinates
chr12:-:62628190..62640707
Molecular Weight (calculated)
127936.0 Da
IEP (calculated)
6.748
GRAVY (calculated)
-0.063
Length
1167 amino acids
Sequence
(BLAST)
(BLAST)
0001: MASSSERWID SLHFSSLFWV PPQAAEQRKD QITAYVKYFG QFTSEQFPED IAELIRNRYP SKENRLFDDV LATFVLHHPE HGHAVVHPII SCIIDGTLEY
0101: DKSSPPFASF ISLVCSSSEK EYSEQWALAC GEILRILTHY NRPIFKVDRQ DKGTDRSTSG SHTSTSESSS SEPGVPSIQH ERKLLRPLSP WITDILLAAP
0201: LGIRSDYFRW CGGVMGKYAA GDLKPPSSAA SHGSGKHPQL LPATPRWAVA NGAGVILSVC DEEVSRYETA TLTAAAVPAL LLPPPTTPMD EHLVAGLPPL
0301: EPYARLFHRY YAIATPSATQ RLLVGLLEAP PSWAPDALDA AVQLVELLRA AEDYASGLRL PRNWMHLHFL RAIGIAMSMR AGIAADSAAA LLFRVLSQPA
0401: LLFPPLRQIE EIEILGGDTS CNKKQREVTA AEATVEATAQ GIASMLCAHG PEVEWRICTI WEAAYGLIPL SSSAVDLPEI VVATPLQPPI LSWNLYIPLL
0501: KVLEYLPRGS PSETCLMKIF VATVEAILQR TFPPDSSREE TRKTRYIFGS ALKNLAVAEL RTMVHSLFLE SCASVELASR LLFVILTVCV SHEAKPNGNK
0601: RPKGEDTHSP SEIGVDTQAT IGKQRPIGSK KVKKQGPVAA FDSYVLASVC GLSCELQLFS MISRGPNYPD PKIIMDEAKP ASDSSTELRN GIHSAVSHTR
0701: RMLEILEALF SLKPSSVGTS WSFSSNEIVA AAMVAAHISD LFKRSKACMH SLSSLIRCKW DNEIHSRASS IYNLIDIHSK TVASIVNKAE PLEAYLIHVP
0801: LLKERPRCLN GKKHYKYTSR NCLTSEQPSG PLCKDSYDRR SSLVCEKASD SSSHSSELAG YTISKVFANF SLDATDLANF LTKDRHFGFN CNAQDLLKSV
0901: LADKQELCFS VVSLLWHKLI ASPETQPIAE STSAQQGWRQ VVDALCNVVS AAPGKAATAI VLQAERELQP WIAKDDEVGQ QMWRINQRIV KLIAELIRNH
1001: DIAESLVILA SNPDLLLRAT DGMLVDGEAC TLPQLELLEV TARAIQPVLD WGESGQSVAD GLTNLLKCRL PATVRCVSHP SAHVRALSTS VLRDIMYAGS
1101: VKPSAKQAAD VNAIHNPAYQ YLSISIIDWK ADIEKCLMCE ASSRLENGMS AQFLDTAARE LGCTISV
0101: DKSSPPFASF ISLVCSSSEK EYSEQWALAC GEILRILTHY NRPIFKVDRQ DKGTDRSTSG SHTSTSESSS SEPGVPSIQH ERKLLRPLSP WITDILLAAP
0201: LGIRSDYFRW CGGVMGKYAA GDLKPPSSAA SHGSGKHPQL LPATPRWAVA NGAGVILSVC DEEVSRYETA TLTAAAVPAL LLPPPTTPMD EHLVAGLPPL
0301: EPYARLFHRY YAIATPSATQ RLLVGLLEAP PSWAPDALDA AVQLVELLRA AEDYASGLRL PRNWMHLHFL RAIGIAMSMR AGIAADSAAA LLFRVLSQPA
0401: LLFPPLRQIE EIEILGGDTS CNKKQREVTA AEATVEATAQ GIASMLCAHG PEVEWRICTI WEAAYGLIPL SSSAVDLPEI VVATPLQPPI LSWNLYIPLL
0501: KVLEYLPRGS PSETCLMKIF VATVEAILQR TFPPDSSREE TRKTRYIFGS ALKNLAVAEL RTMVHSLFLE SCASVELASR LLFVILTVCV SHEAKPNGNK
0601: RPKGEDTHSP SEIGVDTQAT IGKQRPIGSK KVKKQGPVAA FDSYVLASVC GLSCELQLFS MISRGPNYPD PKIIMDEAKP ASDSSTELRN GIHSAVSHTR
0701: RMLEILEALF SLKPSSVGTS WSFSSNEIVA AAMVAAHISD LFKRSKACMH SLSSLIRCKW DNEIHSRASS IYNLIDIHSK TVASIVNKAE PLEAYLIHVP
0801: LLKERPRCLN GKKHYKYTSR NCLTSEQPSG PLCKDSYDRR SSLVCEKASD SSSHSSELAG YTISKVFANF SLDATDLANF LTKDRHFGFN CNAQDLLKSV
0901: LADKQELCFS VVSLLWHKLI ASPETQPIAE STSAQQGWRQ VVDALCNVVS AAPGKAATAI VLQAERELQP WIAKDDEVGQ QMWRINQRIV KLIAELIRNH
1001: DIAESLVILA SNPDLLLRAT DGMLVDGEAC TLPQLELLEV TARAIQPVLD WGESGQSVAD GLTNLLKCRL PATVRCVSHP SAHVRALSTS VLRDIMYAGS
1101: VKPSAKQAAD VNAIHNPAYQ YLSISIIDWK ADIEKCLMCE ASSRLENGMS AQFLDTAARE LGCTISV
0001: MASSSSSERW IDGLQFSSLL WPPPRDPQQH KDQVVAYVEY FGQFTSEQFP DDIAELVRHQ YPSTEKRLLD DVLAMFVLHH PEHGHAVILP IISCLIDGSL
0101: VYSKEAHPFA SFISLVCPSS ENDYSEQWAL ACGEILRILT HYNRPIYKTE QQNGDTERNC LSKATTSGSP TSEPKAGSPT QHERKPLRPL SPWISDILLA
0201: APLGIRSDYF RWCSGVMGKY AAGELKPPTI ASRGSGKHPQ LMPSTPRWAV ANGAGVILSV CDDEVARYET ATLTAVAVPA LLLPPPTTSL DEHLVAGLPA
0301: LEPYARLFHR YYAIATPSAT QRLLLGLLEA PPSWAPDALD AAVQLVELLR AAEDYASGVR LPRNWMHLHF LRAIGIAMSM RAGVAADAAA ALLFRILSQP
0401: ALLFPPLSQV EGVEIQHAPI GGYSSNYRKQ IEVPAAEATI EATAQGIASM LCAHGPEVEW RICTIWEAAY GLIPLNSSAV DLPEIIVATP LQPPILSWNL
0501: YIPLLKVLEY LPRGSPSEAC LMKIFVATVE TILSRTFPPE SSRELTRKAR SSFTTRSATK NLAMSELRAM VHALFLESCA GVELASRLLF VVLTVCVSHE
0601: AQSSGSKRPR SEYASTTENI EANQPVSNNQ TANRKSRNVK GQGPVAAFDS YVLAAVCALA CEVQLYPMIS GGGNFSNSAV AGTITKPVKI NGSSKEYGAG
0701: IDSAISHTRR ILAILEALFS LKPSSVGTPW SYSSSEIVAA AMVAAHISEL FRRSKALTHA LSGLMRCKWD KEIHKRASSL YNLIDVHSKV VASIVDKAEP
0801: LEAYLKNTPV QKDSVTCLNW KQENTCASTT CFDTAVTSAS RTEMNPRGNH KYARHSDEGS GRPSEKGIKD FLLDASDLAN FLTADRLAGF YCGTQKLLRS
0901: VLAEKPELSF SVVSLLWHKL IAAPEIQPTA ESTSAQQGWR QVVDALCNVV SATPAKAAAA VVLQAERELQ PWIAKDDEEG QKMWKINQRI VKVLVELMRN
1001: HDRPESLVIL ASASDLLLRA TDGMLVDGEA CTLPQLELLE ATARAIQPVL AWGPSGLAVV DGLSNLLKCR LPATIRCLSH PSAHVRALST SVLRDIMNQS
1101: SIPIKVTPKL PTTEKNGMNS PSYRFFNAAS IDWKADIQNC LNWEAHSLLS TTMPTQFLDT AARELGCTIS LSQ
0101: VYSKEAHPFA SFISLVCPSS ENDYSEQWAL ACGEILRILT HYNRPIYKTE QQNGDTERNC LSKATTSGSP TSEPKAGSPT QHERKPLRPL SPWISDILLA
0201: APLGIRSDYF RWCSGVMGKY AAGELKPPTI ASRGSGKHPQ LMPSTPRWAV ANGAGVILSV CDDEVARYET ATLTAVAVPA LLLPPPTTSL DEHLVAGLPA
0301: LEPYARLFHR YYAIATPSAT QRLLLGLLEA PPSWAPDALD AAVQLVELLR AAEDYASGVR LPRNWMHLHF LRAIGIAMSM RAGVAADAAA ALLFRILSQP
0401: ALLFPPLSQV EGVEIQHAPI GGYSSNYRKQ IEVPAAEATI EATAQGIASM LCAHGPEVEW RICTIWEAAY GLIPLNSSAV DLPEIIVATP LQPPILSWNL
0501: YIPLLKVLEY LPRGSPSEAC LMKIFVATVE TILSRTFPPE SSRELTRKAR SSFTTRSATK NLAMSELRAM VHALFLESCA GVELASRLLF VVLTVCVSHE
0601: AQSSGSKRPR SEYASTTENI EANQPVSNNQ TANRKSRNVK GQGPVAAFDS YVLAAVCALA CEVQLYPMIS GGGNFSNSAV AGTITKPVKI NGSSKEYGAG
0701: IDSAISHTRR ILAILEALFS LKPSSVGTPW SYSSSEIVAA AMVAAHISEL FRRSKALTHA LSGLMRCKWD KEIHKRASSL YNLIDVHSKV VASIVDKAEP
0801: LEAYLKNTPV QKDSVTCLNW KQENTCASTT CFDTAVTSAS RTEMNPRGNH KYARHSDEGS GRPSEKGIKD FLLDASDLAN FLTADRLAGF YCGTQKLLRS
0901: VLAEKPELSF SVVSLLWHKL IAAPEIQPTA ESTSAQQGWR QVVDALCNVV SATPAKAAAA VVLQAERELQ PWIAKDDEEG QKMWKINQRI VKVLVELMRN
1001: HDRPESLVIL ASASDLLLRA TDGMLVDGEA CTLPQLELLE ATARAIQPVL AWGPSGLAVV DGLSNLLKCR LPATIRCLSH PSAHVRALST SVLRDIMNQS
1101: SIPIKVTPKL PTTEKNGMNS PSYRFFNAAS IDWKADIQNC LNWEAHSLLS TTMPTQFLDT AARELGCTIS LSQ
Arabidopsis Description
GIProtein GIGANTEA [Source:UniProtKB/Swiss-Prot;Acc:Q9SQI2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.