Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 4
- cytosol 1
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU3Hr1G021150.2 | Barley | cytosol | 24.11 | 10.8 |
| PGSC0003DMT400048370 | Potato | nucleus, plasma membrane, plastid | 66.96 | 8.49 |
| GSMUA_Achr10P... | Banana | cytosol, mitochondrion, nucleus, plastid | 27.68 | 7.75 |
| Solyc12g056650.1.1 | Tomato | nucleus | 70.54 | 6.77 |
| VIT_18s0157g00020.t01 | Wine grape | cytosol, peroxisome, plasma membrane | 46.43 | 4.44 |
| KRG91704 | Soybean | cytosol | 46.43 | 4.41 |
| KRH35085 | Soybean | cytosol, nucleus, plasma membrane | 44.64 | 4.25 |
| Bra024536.1-P | Field mustard | cytosol, nucleus, plasma membrane | 41.96 | 4.01 |
| CDY21388 | Canola | cytosol, nucleus, plasma membrane | 41.96 | 4.01 |
| CDY04787 | Canola | cytosol, nucleus, plasma membrane | 41.07 | 3.93 |
| AT1G22770.1 | Thale cress | cytosol | 40.18 | 3.84 |
| KXG31676 | Sorghum | nucleus | 35.71 | 3.44 |
| Os01t0182600-03 | Rice | nucleus | 34.82 | 3.36 |
| Zm00001d008826_P078 | Maize | nucleus | 34.82 | 3.3 |
| Zm00001d039589_P136 | Maize | plasma membrane | 33.93 | 3.22 |
| TraesCS3B01G135400.1 | Wheat | cytosol, nucleus, plasma membrane | 32.14 | 3.12 |
| GSMUA_Achr10P... | Banana | cytosol | 32.14 | 3.07 |
| TraesCS3D01G118200.2 | Wheat | nucleus | 31.25 | 3.04 |
| TraesCS3A01G116300.1 | Wheat | cytosol, nucleus, plasma membrane | 31.25 | 3.03 |
| GSMUA_Achr7P09770_001 | Banana | cytosol | 29.46 | 2.9 |
| HORVU3Hr1G021140.2 | Barley | plastid | 8.04 | 0.92 |
| KRH08640 | Soybean | cytosol | 8.04 | 0.82 |
| GSMUA_Achr10P... | Banana | cytosol, nucleus, peroxisome | 2.68 | 0.48 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400002842 | EnsemblPlantsGene:PGSC0003DMG400001110 | GO:GO:0000003 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0009628 |
| GO:GO:0009791 | GO:GO:2000028 | InterPro:GIGANTEA | PANTHER:PTHR36319 | PGSC:PGSC0003DMG400001110 | UniParc:UPI0002962CA1 |
| UniProt:M0ZKR6 | MapMan:35.2 | : | : | : | : |
Description
Protein GIGANTEA [Source:PGSC_GENE;Acc:PGSC0003DMG400001110]
Coordinates
chr3:+:14265390..14266279
Molecular Weight (calculated)
12268.5 Da
IEP (calculated)
5.092
GRAVY (calculated)
-0.275
Length
112 amino acids
Sequence
(BLAST)
(BLAST)
001: MRTELSSSSS ICDKGSTSQP SNFLEKSSIF SKNTSALRDF MYAGSVKPSV KEVEDVNGIH NPAYQYLSIS IIDWKTDIGK CLMCEANNRL ENGMSAQFLD
101: TAARELGCTI SV
101: TAARELGCTI SV
0001: MASSSSSERW IDGLQFSSLL WPPPRDPQQH KDQVVAYVEY FGQFTSEQFP DDIAELVRHQ YPSTEKRLLD DVLAMFVLHH PEHGHAVILP IISCLIDGSL
0101: VYSKEAHPFA SFISLVCPSS ENDYSEQWAL ACGEILRILT HYNRPIYKTE QQNGDTERNC LSKATTSGSP TSEPKAGSPT QHERKPLRPL SPWISDILLA
0201: APLGIRSDYF RWCSGVMGKY AAGELKPPTI ASRGSGKHPQ LMPSTPRWAV ANGAGVILSV CDDEVARYET ATLTAVAVPA LLLPPPTTSL DEHLVAGLPA
0301: LEPYARLFHR YYAIATPSAT QRLLLGLLEA PPSWAPDALD AAVQLVELLR AAEDYASGVR LPRNWMHLHF LRAIGIAMSM RAGVAADAAA ALLFRILSQP
0401: ALLFPPLSQV EGVEIQHAPI GGYSSNYRKQ IEVPAAEATI EATAQGIASM LCAHGPEVEW RICTIWEAAY GLIPLNSSAV DLPEIIVATP LQPPILSWNL
0501: YIPLLKVLEY LPRGSPSEAC LMKIFVATVE TILSRTFPPE SSRELTRKAR SSFTTRSATK NLAMSELRAM VHALFLESCA GVELASRLLF VVLTVCVSHE
0601: AQSSGSKRPR SEYASTTENI EANQPVSNNQ TANRKSRNVK GQGPVAAFDS YVLAAVCALA CEVQLYPMIS GGGNFSNSAV AGTITKPVKI NGSSKEYGAG
0701: IDSAISHTRR ILAILEALFS LKPSSVGTPW SYSSSEIVAA AMVAAHISEL FRRSKALTHA LSGLMRCKWD KEIHKRASSL YNLIDVHSKV VASIVDKAEP
0801: LEAYLKNTPV QKDSVTCLNW KQENTCASTT CFDTAVTSAS RTEMNPRGNH KYARHSDEGS GRPSEKGIKD FLLDASDLAN FLTADRLAGF YCGTQKLLRS
0901: VLAEKPELSF SVVSLLWHKL IAAPEIQPTA ESTSAQQGWR QVVDALCNVV SATPAKAAAA VVLQAERELQ PWIAKDDEEG QKMWKINQRI VKVLVELMRN
1001: HDRPESLVIL ASASDLLLRA TDGMLVDGEA CTLPQLELLE ATARAIQPVL AWGPSGLAVV DGLSNLLKCR LPATIRCLSH PSAHVRALST SVLRDIMNQS
1101: SIPIKVTPKL PTTEKNGMNS PSYRFFNAAS IDWKADIQNC LNWEAHSLLS TTMPTQFLDT AARELGCTIS LSQ
0101: VYSKEAHPFA SFISLVCPSS ENDYSEQWAL ACGEILRILT HYNRPIYKTE QQNGDTERNC LSKATTSGSP TSEPKAGSPT QHERKPLRPL SPWISDILLA
0201: APLGIRSDYF RWCSGVMGKY AAGELKPPTI ASRGSGKHPQ LMPSTPRWAV ANGAGVILSV CDDEVARYET ATLTAVAVPA LLLPPPTTSL DEHLVAGLPA
0301: LEPYARLFHR YYAIATPSAT QRLLLGLLEA PPSWAPDALD AAVQLVELLR AAEDYASGVR LPRNWMHLHF LRAIGIAMSM RAGVAADAAA ALLFRILSQP
0401: ALLFPPLSQV EGVEIQHAPI GGYSSNYRKQ IEVPAAEATI EATAQGIASM LCAHGPEVEW RICTIWEAAY GLIPLNSSAV DLPEIIVATP LQPPILSWNL
0501: YIPLLKVLEY LPRGSPSEAC LMKIFVATVE TILSRTFPPE SSRELTRKAR SSFTTRSATK NLAMSELRAM VHALFLESCA GVELASRLLF VVLTVCVSHE
0601: AQSSGSKRPR SEYASTTENI EANQPVSNNQ TANRKSRNVK GQGPVAAFDS YVLAAVCALA CEVQLYPMIS GGGNFSNSAV AGTITKPVKI NGSSKEYGAG
0701: IDSAISHTRR ILAILEALFS LKPSSVGTPW SYSSSEIVAA AMVAAHISEL FRRSKALTHA LSGLMRCKWD KEIHKRASSL YNLIDVHSKV VASIVDKAEP
0801: LEAYLKNTPV QKDSVTCLNW KQENTCASTT CFDTAVTSAS RTEMNPRGNH KYARHSDEGS GRPSEKGIKD FLLDASDLAN FLTADRLAGF YCGTQKLLRS
0901: VLAEKPELSF SVVSLLWHKL IAAPEIQPTA ESTSAQQGWR QVVDALCNVV SATPAKAAAA VVLQAERELQ PWIAKDDEEG QKMWKINQRI VKVLVELMRN
1001: HDRPESLVIL ASASDLLLRA TDGMLVDGEA CTLPQLELLE ATARAIQPVL AWGPSGLAVV DGLSNLLKCR LPATIRCLSH PSAHVRALST SVLRDIMNQS
1101: SIPIKVTPKL PTTEKNGMNS PSYRFFNAAS IDWKADIQNC LNWEAHSLLS TTMPTQFLDT AARELGCTIS LSQ
Arabidopsis Description
GIProtein GIGANTEA [Source:UniProtKB/Swiss-Prot;Acc:Q9SQI2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.