Factsheet for HORVU3Hr1G021150.2

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
MultiLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU2Hr1G017290.1
HORVU4Hr1G074990.1
HORVU6Hr1G019280.3

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G22770.1	HORVU6Hr1G019280.3	AT3G11540.1	15155885
AT1G22770.1	HORVU2Hr1G017290.1	AT5G62430.1	17872410
AT1G22770.1	HORVU4Hr1G074990.1	AT5G62430.1	17872410

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr10P...	Banana	cytosol, mitochondrion, nucleus, plastid	70.8	44.25
PGSC0003DMT400002842	Potato	plastid	10.8	24.11
TraesCS3D01G118200.2	Wheat	nucleus	98.4	21.34
TraesCS3B01G135400.1	Wheat	cytosol, nucleus, plasma membrane	98.4	21.3
TraesCS3A01G116300.1	Wheat	cytosol, nucleus, plasma membrane	98.4	21.3
Os01t0182600-03	Rice	nucleus	89.2	19.22
KXG31676	Sorghum	nucleus	87.2	18.76
PGSC0003DMT400048370	Potato	nucleus, plasma membrane, plastid	65.6	18.57
Zm00001d008826_P078	Maize	nucleus	87.2	18.44
Zm00001d039589_P136	Maize	plasma membrane	85.6	18.15
GSMUA_Achr7P09770_001	Banana	cytosol	71.2	15.67
GSMUA_Achr10P...	Banana	cytosol	71.6	15.29
VIT_18s0157g00020.t01	Wine grape	cytosol, peroxisome, plasma membrane	68.0	14.53
KRH35085	Soybean	cytosol, nucleus, plasma membrane	68.0	14.44
KRG91704	Soybean	cytosol	67.6	14.35
CDY04787	Canola	cytosol, nucleus, plasma membrane	66.4	14.19
CDY21388	Canola	cytosol, nucleus, plasma membrane	66.4	14.18
Bra024536.1-P	Field mustard	cytosol, nucleus, plasma membrane	66.4	14.18
AT1G22770.1	Thale cress	cytosol	66.4	14.15
Solyc04g071990.2.1	Tomato	cytosol	65.6	14.05
Solyc12g056650.1.1	Tomato	nucleus	65.6	14.05
KRH08640	Soybean	cytosol	47.2	10.79
HORVU3Hr1G021140.2	Barley	plastid	0.0	0.0
GSMUA_Achr10P...	Banana	cytosol, nucleus, peroxisome	0.0	0.0

Protein Annotations

EnsemblPlants:HORVU3Hr1G021150.2	EnsemblPlantsGene:HORVU3Hr1G021150	GO:GO:0000003	GO:GO:0007275	GO:GO:0008150	GO:GO:0009628
GO:GO:0009791	GO:GO:2000028	InterPro:GIGANTEA	PANTHER:PTHR36319	SEG:seg	MapMan:35.1

Description

No Description!

Coordinates

chrchr3H:-:67560574..67562131

Molecular Weight (calculated)

26903.2 Da

IEP (calculated)

5.339

GRAVY (calculated)

-0.044

Length

250 amino acids

Sequence
(BLAST)

001: XIASPETQMS AESTSAHQGW RKVVDALCDV VSASPAKAST AIVLQAEKDL QPWIARDDEE GQKMWRVNQR IVKLIAELMR NHDSPEALII LASASDLLLR
101: ATDGMLVDGE ACTLPQLELL EVTARAIHLI VEWGDPGVAV ADGLSNLLKC RLSPTIRCLS HASAHVRALS MSVLRDILNS GPLGSSKTIQ GEQRNGIQSP
201: NYQCAAANTV NWQADVERCI DWEARSRRAT GMTLAFLTAA ANELGCPLPC

Best Arabidopsis Sequence Match ( AT1G22770.1 )
(BLAST)

0001: MASSSSSERW IDGLQFSSLL WPPPRDPQQH KDQVVAYVEY FGQFTSEQFP DDIAELVRHQ YPSTEKRLLD DVLAMFVLHH PEHGHAVILP IISCLIDGSL
0101: VYSKEAHPFA SFISLVCPSS ENDYSEQWAL ACGEILRILT HYNRPIYKTE QQNGDTERNC LSKATTSGSP TSEPKAGSPT QHERKPLRPL SPWISDILLA
0201: APLGIRSDYF RWCSGVMGKY AAGELKPPTI ASRGSGKHPQ LMPSTPRWAV ANGAGVILSV CDDEVARYET ATLTAVAVPA LLLPPPTTSL DEHLVAGLPA
0301: LEPYARLFHR YYAIATPSAT QRLLLGLLEA PPSWAPDALD AAVQLVELLR AAEDYASGVR LPRNWMHLHF LRAIGIAMSM RAGVAADAAA ALLFRILSQP
0401: ALLFPPLSQV EGVEIQHAPI GGYSSNYRKQ IEVPAAEATI EATAQGIASM LCAHGPEVEW RICTIWEAAY GLIPLNSSAV DLPEIIVATP LQPPILSWNL
0501: YIPLLKVLEY LPRGSPSEAC LMKIFVATVE TILSRTFPPE SSRELTRKAR SSFTTRSATK NLAMSELRAM VHALFLESCA GVELASRLLF VVLTVCVSHE
0601: AQSSGSKRPR SEYASTTENI EANQPVSNNQ TANRKSRNVK GQGPVAAFDS YVLAAVCALA CEVQLYPMIS GGGNFSNSAV AGTITKPVKI NGSSKEYGAG
0701: IDSAISHTRR ILAILEALFS LKPSSVGTPW SYSSSEIVAA AMVAAHISEL FRRSKALTHA LSGLMRCKWD KEIHKRASSL YNLIDVHSKV VASIVDKAEP
0801: LEAYLKNTPV QKDSVTCLNW KQENTCASTT CFDTAVTSAS RTEMNPRGNH KYARHSDEGS GRPSEKGIKD FLLDASDLAN FLTADRLAGF YCGTQKLLRS
0901: VLAEKPELSF SVVSLLWHKL IAAPEIQPTA ESTSAQQGWR QVVDALCNVV SATPAKAAAA VVLQAERELQ PWIAKDDEEG QKMWKINQRI VKVLVELMRN
1001: HDRPESLVIL ASASDLLLRA TDGMLVDGEA CTLPQLELLE ATARAIQPVL AWGPSGLAVV DGLSNLLKCR LPATIRCLSH PSAHVRALST SVLRDIMNQS
1101: SIPIKVTPKL PTTEKNGMNS PSYRFFNAAS IDWKADIQNC LNWEAHSLLS TTMPTQFLDT AARELGCTIS LSQ

Arabidopsis Description

GIProtein GIGANTEA [Source:UniProtKB/Swiss-Prot;Acc:Q9SQI2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.