Factsheet for GSMUA_Achr10P27330_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr3P22610_001
GSMUA_Achr7P11200_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G22770.1	GSMUA_Achr7P11200_001	AT1G68050.1	17704763
AT1G22770.1	GSMUA_Achr7P11200_001	AT1G68050.1	17872410
AT1G22770.1	GSMUA_Achr3P22610_001	AT3G11540.1	15155885

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr7P09770_001	Banana	cytosol	85.14	87.76
GSMUA_Achr10P...	Banana	cytosol, nucleus, peroxisome	44.24	83.41
Os01t0182600-03	Rice	nucleus	75.06	75.78
KXG31676	Sorghum	nucleus	75.15	75.73
Zm00001d008826_P078	Maize	nucleus	75.66	74.96
TraesCS3A01G116300.1	Wheat	cytosol, nucleus, plasma membrane	73.1	74.11
TraesCS3D01G118200.2	Wheat	nucleus	72.93	74.07
Zm00001d039589_P136	Maize	plasma membrane	74.47	73.96
TraesCS3B01G135400.1	Wheat	cytosol, nucleus, plasma membrane	72.93	73.94
GSMUA_Achr10P...	Banana	cytosol, mitochondrion, nucleus, plastid	24.85	72.75
VIT_18s0157g00020.t01	Wine grape	cytosol, peroxisome, plasma membrane	72.33	72.39
HORVU3Hr1G021150.2	Barley	cytosol	15.29	71.6
KRH35085	Soybean	cytosol, nucleus, plasma membrane	70.88	70.52
KRG91704	Soybean	cytosol	70.45	70.03
HORVU3Hr1G021140.2	Barley	plastid	57.64	69.09
Solyc04g071990.2.1	Tomato	cytosol	68.06	68.29
Bra024536.1-P	Field mustard	cytosol, nucleus, plasma membrane	68.06	68.06
KRH08640	Soybean	cytosol	63.54	68.01
CDY21388	Canola	cytosol, nucleus, plasma membrane	67.89	67.89
CDY04787	Canola	cytosol, nucleus, plasma membrane	67.63	67.69
AT1G22770.1	Thale cress	cytosol	67.81	67.69
Solyc12g056650.1.1	Tomato	nucleus	66.95	67.18
PGSC0003DMT400048370	Potato	nucleus, plasma membrane, plastid	49.19	65.23
PGSC0003DMT400002842	Potato	plastid	3.07	32.14

Protein Annotations

EnsemblPlants:GSMUA_Achr10P27330_001	EnsemblPlants:GSMUA_Achr10T27330_001	EnsemblPlantsGene:GSMUA_Achr10G27330_001	GO:GO:0000003	GO:GO:0007275	GO:GO:0008150
GO:GO:0009628	GO:GO:0009791	GO:GO:2000028	InterPro:GIGANTEA	PANTHER:PTHR36319	PRINTS:PR02081
SEG:seg	UniParc:UPI000294BD77	UniProt:M0RLV7	MapMan:26.1.2.3.2	:	:

Description

Protein GIGANTEA [Source:GMGC_GENE;Acc:GSMUA_Achr10G27330_001]

Coordinates

chr10:-:30521906..30537160

Molecular Weight (calculated)

127986.0 Da

IEP (calculated)

6.677

GRAVY (calculated)

0.010

Length

1171 amino acids

Sequence
(BLAST)

0001: MSISNEKWID GLQFSSLFWP PPQDENQRQA QVLAYVEYFS QFTTEEFPED ITQLIQTHYP SQEKRLLDEV LAIFILHHPE HGHAIVHPIL SLIIDGTLVY
0101: DRNDPPFSSF ISLVGQNSEK EYSEQWALAC GEILRILTHY NRPIYKVEHH NSETERSNSG NHATTSKPVK QDGHDQILQE HDRKPLRPLS PWITDILLAS
0201: PLGIRSDYFR WCGGVMGKYA AGGELKPPTT ACSRGSGKHP QLMPSTPRWA VANGAGVILS VCDEEVARYE TANLTAAAVP ALLLPPPTTP LDEHLVAGLP
0301: PLEPYARLFH RYYAIATPSA TQRLLLGLLE APPSWAPDAL DAAVQLVELL RAAEEYASGM RLPRNWMHLH FLRAIGIAMS MRAGVAADAA AALLFRILSQ
0401: PTLLFPPLWH AEGVAVHHEP LGGCISSYKK QLEAPASEAS IEATAQGIAT MLCAHGPDVE WRMCTIWEAA YGLLPLSSSA VDLPEIVVAA PLQPPPLSWN
0501: LYLPLLKVLE YLPRGSPSEA CLVRIFVATV EAILRRTFPS KHSTEQSRKP RTHGSMWSTT KNLAIAELHT MIHSLFLDSC ATIDLASRLL FVVLTVCVSH
0601: EALPNGSKRA TDCGSYSAEE IIEVPQIVNG KTANRNKNRK KQGPVATFDS YVLAAICALA CELQLFPMIS KNGMHSNSKD SANSIKAAKT NRVAHELHNS
0701: IKSAVCHTSR ILGILEALFS LKPSSIGTLW SYSSDEIVAA AMVAAHVSEL FGRSKACMNA LSVMMHCKWD VEISTRASSL YNLIDIHGKI VASIVHKAEP
0801: IEAQLAHAQV RRDDPACSGG RISVIASSSI FEPEDIPCSE SSNSLSRILV KTDRGILSTG TIVETSGKGI SSLPVDASDL ANFLMTDRYI GYNCGAQALL
0901: RSVFAEKQEL CFSVVSLLWH KLIAAPETKM SAESTSAHQG WRQVVDAICN VVSASPTKAS TAIVLQAEKD LQPWIARDDE QGQRMWRINH RIVKLIVELM
1001: RNHESPEALI ILASASDLLL SATDGMLVDG EACTLPQLEL LEVTAKAVQL VLHWGGPGLA VVDGLSNLLK CRLSATIRCL SHPSALVRAL SKSVLRDILH
1101: HGSCLNVDNS SYQLLNMGII NWRSDIDKCI QWEAQSRIAT GLTLAYLSAA AKELGCPIDS CSSSPLLNCS S

Best Arabidopsis Sequence Match ( AT1G22770.1 )
(BLAST)

0001: MASSSSSERW IDGLQFSSLL WPPPRDPQQH KDQVVAYVEY FGQFTSEQFP DDIAELVRHQ YPSTEKRLLD DVLAMFVLHH PEHGHAVILP IISCLIDGSL
0101: VYSKEAHPFA SFISLVCPSS ENDYSEQWAL ACGEILRILT HYNRPIYKTE QQNGDTERNC LSKATTSGSP TSEPKAGSPT QHERKPLRPL SPWISDILLA
0201: APLGIRSDYF RWCSGVMGKY AAGELKPPTI ASRGSGKHPQ LMPSTPRWAV ANGAGVILSV CDDEVARYET ATLTAVAVPA LLLPPPTTSL DEHLVAGLPA
0301: LEPYARLFHR YYAIATPSAT QRLLLGLLEA PPSWAPDALD AAVQLVELLR AAEDYASGVR LPRNWMHLHF LRAIGIAMSM RAGVAADAAA ALLFRILSQP
0401: ALLFPPLSQV EGVEIQHAPI GGYSSNYRKQ IEVPAAEATI EATAQGIASM LCAHGPEVEW RICTIWEAAY GLIPLNSSAV DLPEIIVATP LQPPILSWNL
0501: YIPLLKVLEY LPRGSPSEAC LMKIFVATVE TILSRTFPPE SSRELTRKAR SSFTTRSATK NLAMSELRAM VHALFLESCA GVELASRLLF VVLTVCVSHE
0601: AQSSGSKRPR SEYASTTENI EANQPVSNNQ TANRKSRNVK GQGPVAAFDS YVLAAVCALA CEVQLYPMIS GGGNFSNSAV AGTITKPVKI NGSSKEYGAG
0701: IDSAISHTRR ILAILEALFS LKPSSVGTPW SYSSSEIVAA AMVAAHISEL FRRSKALTHA LSGLMRCKWD KEIHKRASSL YNLIDVHSKV VASIVDKAEP
0801: LEAYLKNTPV QKDSVTCLNW KQENTCASTT CFDTAVTSAS RTEMNPRGNH KYARHSDEGS GRPSEKGIKD FLLDASDLAN FLTADRLAGF YCGTQKLLRS
0901: VLAEKPELSF SVVSLLWHKL IAAPEIQPTA ESTSAQQGWR QVVDALCNVV SATPAKAAAA VVLQAERELQ PWIAKDDEEG QKMWKINQRI VKVLVELMRN
1001: HDRPESLVIL ASASDLLLRA TDGMLVDGEA CTLPQLELLE ATARAIQPVL AWGPSGLAVV DGLSNLLKCR LPATIRCLSH PSAHVRALST SVLRDIMNQS
1101: SIPIKVTPKL PTTEKNGMNS PSYRFFNAAS IDWKADIQNC LNWEAHSLLS TTMPTQFLDT AARELGCTIS LSQ

Arabidopsis Description

GIProtein GIGANTEA [Source:UniProtKB/Swiss-Prot;Acc:Q9SQI2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.