Factsheet for GSMUA_Achr10P21010_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, nucleus, cytosol

Predictor Summary:

nucleus 4
mitochondrion 2
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr3P22610_001
GSMUA_Achr7P11200_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G22770.1	GSMUA_Achr7P11200_001	AT1G68050.1	17704763
AT1G22770.1	GSMUA_Achr7P11200_001	AT1G68050.1	17872410
AT1G22770.1	GSMUA_Achr3P22610_001	AT3G11540.1	15155885

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU3Hr1G021150.2	Barley	cytosol	44.25	70.8
PGSC0003DMT400048370	Potato	nucleus, plasma membrane, plastid	63.75	28.88
PGSC0003DMT400002842	Potato	plastid	7.75	27.68
GSMUA_Achr10P...	Banana	cytosol	72.75	24.85
GSMUA_Achr7P09770_001	Banana	cytosol	70.0	24.65
KXG31676	Sorghum	nucleus	70.0	24.1
Zm00001d008826_P078	Maize	nucleus	70.75	23.94
Os01t0182600-03	Rice	nucleus	69.25	23.88
TraesCS3D01G118200.2	Wheat	nucleus	68.75	23.85
TraesCS3A01G116300.1	Wheat	cytosol, nucleus, plasma membrane	68.75	23.81
TraesCS3B01G135400.1	Wheat	cytosol, nucleus, plasma membrane	68.5	23.72
VIT_18s0157g00020.t01	Wine grape	cytosol, peroxisome, plasma membrane	69.25	23.68
Zm00001d039589_P136	Maize	plasma membrane	69.25	23.49
KRH35085	Soybean	cytosol, nucleus, plasma membrane	65.5	22.26
KRG91704	Soybean	cytosol	65.5	22.24
Solyc04g071990.2.1	Tomato	cytosol	64.25	22.02
Solyc12g056650.1.1	Tomato	nucleus	63.25	21.68
CDY21388	Canola	cytosol, nucleus, plasma membrane	62.5	21.35
Bra024536.1-P	Field mustard	cytosol, nucleus, plasma membrane	62.5	21.35
CDY04787	Canola	cytosol, nucleus, plasma membrane	62.25	21.28
AT1G22770.1	Thale cress	cytosol	62.0	21.14
KRH08640	Soybean	cytosol	51.0	18.65
HORVU3Hr1G021140.2	Barley	plastid	23.75	9.72
GSMUA_Achr10P...	Banana	cytosol, nucleus, peroxisome	0.5	0.32

Protein Annotations

EnsemblPlants:GSMUA_Achr10P21010_001	EnsemblPlants:GSMUA_Achr10T21010_001	EnsemblPlantsGene:GSMUA_Achr10G21010_001	GO:GO:0000003	GO:GO:0007275	GO:GO:0008150
GO:GO:0009628	GO:GO:0009791	GO:GO:2000028	InterPro:GIGANTEA	PANTHER:PTHR36319	SEG:seg
UniParc:UPI000296776E	UniProt:M0RK26	MapMan:35.1	:	:	:

Description

Protein GIGANTEA [Source:GMGC_GENE;Acc:GSMUA_Achr10G21010_001]

Coordinates

chr10:-:26808620..26812063

Molecular Weight (calculated)

43372.4 Da

IEP (calculated)

7.260

GRAVY (calculated)

0.057

Length

400 amino acids

Sequence
(BLAST)

001: MVAAHVSELF GRSKACMNAL SVLRRCKWDT EISTRASSLY HLIDIHGKNV ASIVHKAEPL EAHLDNANSE STSSSSAMLL KPEKPSLVNH IMAEASSKSI
101: ANLPVDAPAL ATFLTMDRNV GYNWGAQALL RNVFAEKQEL CISVVSLLWH KLIAAPETKV SAESTSAQQG WRQVVDAICN VVSASPTKAV TAIVLQAEKD
201: LQPWIARDDE QGQKKWRINQ RIIKLIVELM RNHDSPEALM ILAGASDILL RATDGMLVDG EACTLPQLEL LEVTARAVRL VIQWGESGLA VADDLSNLLK
301: CRLPAAVQCL SHPSAHVRAL SIAVLRNIIQ NSMSNGSGRI QGDAPGLSDP SYQCLNLGII NWHSDVEKCL KWEARSRLAT GLTLAFLSAA AKELGCPISC

Best Arabidopsis Sequence Match ( AT1G22770.1 )
(BLAST)

0001: MASSSSSERW IDGLQFSSLL WPPPRDPQQH KDQVVAYVEY FGQFTSEQFP DDIAELVRHQ YPSTEKRLLD DVLAMFVLHH PEHGHAVILP IISCLIDGSL
0101: VYSKEAHPFA SFISLVCPSS ENDYSEQWAL ACGEILRILT HYNRPIYKTE QQNGDTERNC LSKATTSGSP TSEPKAGSPT QHERKPLRPL SPWISDILLA
0201: APLGIRSDYF RWCSGVMGKY AAGELKPPTI ASRGSGKHPQ LMPSTPRWAV ANGAGVILSV CDDEVARYET ATLTAVAVPA LLLPPPTTSL DEHLVAGLPA
0301: LEPYARLFHR YYAIATPSAT QRLLLGLLEA PPSWAPDALD AAVQLVELLR AAEDYASGVR LPRNWMHLHF LRAIGIAMSM RAGVAADAAA ALLFRILSQP
0401: ALLFPPLSQV EGVEIQHAPI GGYSSNYRKQ IEVPAAEATI EATAQGIASM LCAHGPEVEW RICTIWEAAY GLIPLNSSAV DLPEIIVATP LQPPILSWNL
0501: YIPLLKVLEY LPRGSPSEAC LMKIFVATVE TILSRTFPPE SSRELTRKAR SSFTTRSATK NLAMSELRAM VHALFLESCA GVELASRLLF VVLTVCVSHE
0601: AQSSGSKRPR SEYASTTENI EANQPVSNNQ TANRKSRNVK GQGPVAAFDS YVLAAVCALA CEVQLYPMIS GGGNFSNSAV AGTITKPVKI NGSSKEYGAG
0701: IDSAISHTRR ILAILEALFS LKPSSVGTPW SYSSSEIVAA AMVAAHISEL FRRSKALTHA LSGLMRCKWD KEIHKRASSL YNLIDVHSKV VASIVDKAEP
0801: LEAYLKNTPV QKDSVTCLNW KQENTCASTT CFDTAVTSAS RTEMNPRGNH KYARHSDEGS GRPSEKGIKD FLLDASDLAN FLTADRLAGF YCGTQKLLRS
0901: VLAEKPELSF SVVSLLWHKL IAAPEIQPTA ESTSAQQGWR QVVDALCNVV SATPAKAAAA VVLQAERELQ PWIAKDDEEG QKMWKINQRI VKVLVELMRN
1001: HDRPESLVIL ASASDLLLRA TDGMLVDGEA CTLPQLELLE ATARAIQPVL AWGPSGLAVV DGLSNLLKCR LPATIRCLSH PSAHVRALST SVLRDIMNQS
1101: SIPIKVTPKL PTTEKNGMNS PSYRFFNAAS IDWKADIQNC LNWEAHSLLS TTMPTQFLDT AARELGCTIS LSQ

Arabidopsis Description

GIProtein GIGANTEA [Source:UniProtKB/Swiss-Prot;Acc:Q9SQI2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.