Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra024536.1-P | Field mustard | cytosol, nucleus, plasma membrane | 90.62 | 90.78 |
| CDY21388 | Canola | cytosol, nucleus, plasma membrane | 90.54 | 90.69 |
| CDY04787 | Canola | cytosol, nucleus, plasma membrane | 90.28 | 90.51 |
| VIT_18s0157g00020.t01 | Wine grape | cytosol, peroxisome, plasma membrane | 75.53 | 75.73 |
| KRG91704 | Soybean | cytosol | 75.28 | 74.96 |
| KRH35085 | Soybean | cytosol, nucleus, plasma membrane | 75.11 | 74.85 |
| GSMUA_Achr10P... | Banana | cytosol, nucleus, peroxisome | 38.7 | 73.11 |
| KRH08640 | Soybean | cytosol | 67.69 | 72.58 |
| Solyc12g056650.1.1 | Tomato | nucleus | 71.44 | 71.81 |
| Solyc04g071990.2.1 | Tomato | cytosol | 71.36 | 71.72 |
| PGSC0003DMT400048370 | Potato | nucleus, plasma membrane, plastid | 53.45 | 71.01 |
| GSMUA_Achr7P09770_001 | Banana | cytosol | 67.09 | 69.28 |
| Os01t0182600-03 | Rice | nucleus | 67.77 | 68.53 |
| GSMUA_Achr10P... | Banana | cytosol | 67.69 | 67.81 |
| KXG31676 | Sorghum | nucleus | 67.09 | 67.73 |
| TraesCS3B01G135400.1 | Wheat | cytosol, nucleus, plasma membrane | 66.67 | 67.71 |
| TraesCS3D01G118200.2 | Wheat | nucleus | 66.5 | 67.65 |
| TraesCS3A01G116300.1 | Wheat | cytosol, nucleus, plasma membrane | 66.58 | 67.62 |
| Zm00001d039589_P136 | Maize | plasma membrane | 67.35 | 67.01 |
| Zm00001d008826_P078 | Maize | nucleus | 67.35 | 66.84 |
| HORVU3Hr1G021150.2 | Barley | cytosol | 14.15 | 66.4 |
| HORVU3Hr1G021140.2 | Barley | plastid | 52.09 | 62.54 |
| GSMUA_Achr10P... | Banana | cytosol, mitochondrion, nucleus, plastid | 21.14 | 62.0 |
| PGSC0003DMT400002842 | Potato | plastid | 3.84 | 40.18 |
Protein Annotations
| MapMan:26.1.2.3.2 | EntrezGene:838883 | ProteinID:AAC25507.1 | ProteinID:AAF00023.1 | ProteinID:AAT97405.1 | ProteinID:AEE30286.1 |
| EMBL:AF105064 | EMBL:AJ133786 | ArrayExpress:AT1G22770 | EnsemblPlantsGene:AT1G22770 | RefSeq:AT1G22770 | TAIR:AT1G22770 |
| RefSeq:AT1G22770-TAIR-G | EnsemblPlants:AT1G22770.1 | TAIR:AT1G22770.1 | Unigene:At.209 | ProteinID:CAA72908.1 | ncoils:Coil |
| Symbol:GI | InterPro:GIGANTEA | GO:GO:0000003 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005654 | GO:GO:0005737 |
| GO:GO:0006139 | GO:GO:0006355 | GO:GO:0006950 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0007275 |
| GO:GO:0007623 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009409 | GO:GO:0009585 |
| GO:GO:0009605 | GO:GO:0009628 | GO:GO:0009637 | GO:GO:0009791 | GO:GO:0009908 | GO:GO:0009987 |
| GO:GO:0010017 | GO:GO:0010218 | GO:GO:0010378 | GO:GO:0030154 | GO:GO:0042542 | GO:GO:0042752 |
| GO:GO:0048511 | GO:GO:0048578 | GO:GO:0080167 | GO:GO:2000028 | RefSeq:NP_564180.1 | PO:PO:0000003 |
| PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 |
| PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 |
| PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 |
| PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 |
| PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 |
| PRINTS:PR02081 | PANTHER:PTHR36319 | UniProt:Q68KJ4 | UniProt:Q9SQI2 | UniParc:UPI0000032952 | SEG:seg |
Description
GIProtein GIGANTEA [Source:UniProtKB/Swiss-Prot;Acc:Q9SQI2]
Coordinates
chr1:+:8061751..8067790
Molecular Weight (calculated)
127882.0 Da
IEP (calculated)
7.037
GRAVY (calculated)
-0.053
Length
1173 amino acids
Sequence
(BLAST)
(BLAST)
0001: MASSSSSERW IDGLQFSSLL WPPPRDPQQH KDQVVAYVEY FGQFTSEQFP DDIAELVRHQ YPSTEKRLLD DVLAMFVLHH PEHGHAVILP IISCLIDGSL
0101: VYSKEAHPFA SFISLVCPSS ENDYSEQWAL ACGEILRILT HYNRPIYKTE QQNGDTERNC LSKATTSGSP TSEPKAGSPT QHERKPLRPL SPWISDILLA
0201: APLGIRSDYF RWCSGVMGKY AAGELKPPTI ASRGSGKHPQ LMPSTPRWAV ANGAGVILSV CDDEVARYET ATLTAVAVPA LLLPPPTTSL DEHLVAGLPA
0301: LEPYARLFHR YYAIATPSAT QRLLLGLLEA PPSWAPDALD AAVQLVELLR AAEDYASGVR LPRNWMHLHF LRAIGIAMSM RAGVAADAAA ALLFRILSQP
0401: ALLFPPLSQV EGVEIQHAPI GGYSSNYRKQ IEVPAAEATI EATAQGIASM LCAHGPEVEW RICTIWEAAY GLIPLNSSAV DLPEIIVATP LQPPILSWNL
0501: YIPLLKVLEY LPRGSPSEAC LMKIFVATVE TILSRTFPPE SSRELTRKAR SSFTTRSATK NLAMSELRAM VHALFLESCA GVELASRLLF VVLTVCVSHE
0601: AQSSGSKRPR SEYASTTENI EANQPVSNNQ TANRKSRNVK GQGPVAAFDS YVLAAVCALA CEVQLYPMIS GGGNFSNSAV AGTITKPVKI NGSSKEYGAG
0701: IDSAISHTRR ILAILEALFS LKPSSVGTPW SYSSSEIVAA AMVAAHISEL FRRSKALTHA LSGLMRCKWD KEIHKRASSL YNLIDVHSKV VASIVDKAEP
0801: LEAYLKNTPV QKDSVTCLNW KQENTCASTT CFDTAVTSAS RTEMNPRGNH KYARHSDEGS GRPSEKGIKD FLLDASDLAN FLTADRLAGF YCGTQKLLRS
0901: VLAEKPELSF SVVSLLWHKL IAAPEIQPTA ESTSAQQGWR QVVDALCNVV SATPAKAAAA VVLQAERELQ PWIAKDDEEG QKMWKINQRI VKVLVELMRN
1001: HDRPESLVIL ASASDLLLRA TDGMLVDGEA CTLPQLELLE ATARAIQPVL AWGPSGLAVV DGLSNLLKCR LPATIRCLSH PSAHVRALST SVLRDIMNQS
1101: SIPIKVTPKL PTTEKNGMNS PSYRFFNAAS IDWKADIQNC LNWEAHSLLS TTMPTQFLDT AARELGCTIS LSQ
0101: VYSKEAHPFA SFISLVCPSS ENDYSEQWAL ACGEILRILT HYNRPIYKTE QQNGDTERNC LSKATTSGSP TSEPKAGSPT QHERKPLRPL SPWISDILLA
0201: APLGIRSDYF RWCSGVMGKY AAGELKPPTI ASRGSGKHPQ LMPSTPRWAV ANGAGVILSV CDDEVARYET ATLTAVAVPA LLLPPPTTSL DEHLVAGLPA
0301: LEPYARLFHR YYAIATPSAT QRLLLGLLEA PPSWAPDALD AAVQLVELLR AAEDYASGVR LPRNWMHLHF LRAIGIAMSM RAGVAADAAA ALLFRILSQP
0401: ALLFPPLSQV EGVEIQHAPI GGYSSNYRKQ IEVPAAEATI EATAQGIASM LCAHGPEVEW RICTIWEAAY GLIPLNSSAV DLPEIIVATP LQPPILSWNL
0501: YIPLLKVLEY LPRGSPSEAC LMKIFVATVE TILSRTFPPE SSRELTRKAR SSFTTRSATK NLAMSELRAM VHALFLESCA GVELASRLLF VVLTVCVSHE
0601: AQSSGSKRPR SEYASTTENI EANQPVSNNQ TANRKSRNVK GQGPVAAFDS YVLAAVCALA CEVQLYPMIS GGGNFSNSAV AGTITKPVKI NGSSKEYGAG
0701: IDSAISHTRR ILAILEALFS LKPSSVGTPW SYSSSEIVAA AMVAAHISEL FRRSKALTHA LSGLMRCKWD KEIHKRASSL YNLIDVHSKV VASIVDKAEP
0801: LEAYLKNTPV QKDSVTCLNW KQENTCASTT CFDTAVTSAS RTEMNPRGNH KYARHSDEGS GRPSEKGIKD FLLDASDLAN FLTADRLAGF YCGTQKLLRS
0901: VLAEKPELSF SVVSLLWHKL IAAPEIQPTA ESTSAQQGWR QVVDALCNVV SATPAKAAAA VVLQAERELQ PWIAKDDEEG QKMWKINQRI VKVLVELMRN
1001: HDRPESLVIL ASASDLLLRA TDGMLVDGEA CTLPQLELLE ATARAIQPVL AWGPSGLAVV DGLSNLLKCR LPATIRCLSH PSAHVRALST SVLRDIMNQS
1101: SIPIKVTPKL PTTEKNGMNS PSYRFFNAAS IDWKADIQNC LNWEAHSLLS TTMPTQFLDT AARELGCTIS LSQ
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.