Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra001408.1-P | |
| Bra010082.1-P | |
| Bra029261.1-P | |
| Bra034832.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G22770.1 | Bra001408.1-P | AT3G11540.1 | 15155885 |
| AT1G22770.1 | Bra034832.1-P | AT3G11540.1 | 15155885 |
| AT1G22770.1 | Bra010082.1-P | AT5G62430.1 | 17872410 |
| AT1G22770.1 | Bra029261.1-P | AT5G62430.1 | 17872410 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY21388 | Canola | cytosol, nucleus, plasma membrane | 99.15 | 99.15 |
| CDY04787 | Canola | cytosol, nucleus, plasma membrane | 98.29 | 98.38 |
| AT1G22770.1 | Thale cress | cytosol | 90.78 | 90.62 |
| VIT_18s0157g00020.t01 | Wine grape | cytosol, peroxisome, plasma membrane | 74.21 | 74.27 |
| KRG91704 | Soybean | cytosol | 74.64 | 74.19 |
| KRH35085 | Soybean | cytosol, nucleus, plasma membrane | 74.55 | 74.17 |
| GSMUA_Achr10P... | Banana | cytosol, nucleus, peroxisome | 38.51 | 72.62 |
| KRH08640 | Soybean | cytosol | 66.52 | 71.21 |
| Solyc04g071990.2.1 | Tomato | cytosol | 70.28 | 70.52 |
| Solyc12g056650.1.1 | Tomato | nucleus | 70.2 | 70.44 |
| PGSC0003DMT400048370 | Potato | nucleus, plasma membrane, plastid | 52.52 | 69.65 |
| GSMUA_Achr7P09770_001 | Banana | cytosol | 67.04 | 69.1 |
| Os01t0182600-03 | Rice | nucleus | 68.23 | 68.88 |
| GSMUA_Achr10P... | Banana | cytosol | 68.06 | 68.06 |
| KXG31676 | Sorghum | nucleus | 67.29 | 67.81 |
| TraesCS3B01G135400.1 | Wheat | cytosol, nucleus, plasma membrane | 66.78 | 67.71 |
| TraesCS3D01G118200.2 | Wheat | nucleus | 66.52 | 67.56 |
| TraesCS3A01G116300.1 | Wheat | cytosol, nucleus, plasma membrane | 66.61 | 67.53 |
| Zm00001d039589_P136 | Maize | plasma membrane | 67.63 | 67.18 |
| Zm00001d008826_P078 | Maize | nucleus | 67.81 | 67.17 |
| HORVU3Hr1G021150.2 | Barley | cytosol | 14.18 | 66.4 |
| GSMUA_Achr10P... | Banana | cytosol, mitochondrion, nucleus, plastid | 21.35 | 62.5 |
| HORVU3Hr1G021140.2 | Barley | plastid | 52.09 | 62.44 |
| PGSC0003DMT400002842 | Potato | plastid | 4.01 | 41.96 |
Protein Annotations
| MapMan:26.1.2.3.2 | EnsemblPlantsGene:Bra024536 | EnsemblPlants:Bra024536.1 | EnsemblPlants:Bra024536.1-P | InterPro:GIGANTEA | GO:GO:0000003 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005654 | GO:GO:0006139 |
| GO:GO:0006355 | GO:GO:0006950 | GO:GO:0007275 | GO:GO:0007623 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009409 | GO:GO:0009628 | GO:GO:0009637 | GO:GO:0009791 | GO:GO:0009987 |
| GO:GO:0010218 | GO:GO:0010378 | GO:GO:0042542 | GO:GO:0042752 | GO:GO:0048578 | GO:GO:0080167 |
| GO:GO:2000028 | UniProt:M4E6Y1 | PRINTS:PR02081 | PANTHER:PTHR36319 | UniParc:UPI0002542A81 | SEG:seg |
Description
AT1G22770 (E=0.0) GI, FB | GI (GIGANTEA)
Coordinates
chrA09:-:24531708..24536238
Molecular Weight (calculated)
127151.0 Da
IEP (calculated)
7.033
GRAVY (calculated)
-0.065
Length
1171 amino acids
Sequence
(BLAST)
(BLAST)
0001: MTSPTSSERW TDGLQFSSLL WSPPRDPQQH KDQVVAYVEY FGQFTSEQFP DDIAELVRNQ YPSTEKRLLD DVLAMFVLHH PEHGHAVILP IISCLIDGTL
0101: VYSKEAHPFA SFISLVSPNS ENDYSEQWAL ACGEILRILT HYNRPIYKTE QQNGETESKA STSGSPTLSE AKAVSPGQHE RKPLRPLSPW ISDILLAAPL
0201: GIRSDYFRWC SGVMGKYAAG ELKPPTIATR GSGKHPQYMP STPRWAVANG AGVILSVCDD EVARYETATL TAVAVPALLL PPPTTSLDEH LVAGLPALEP
0301: YARLFHRYYA IATPSATQRL LLGLLEAPPS WAPDALDAAV QLVELLRAAE DYASGVRLPR NWMHLHFLRA IGIAMSMRAG VAADAAAALL FRILSQPALL
0401: FPPLSQAEGV EIKHAPIGGY GSNYRKQIEV PAAEATIEAT AQGIASMLCA HGPEVEWRIC TIWEAAYGLI PLNSSAVDLP EIIVATPLQP PILSWNLYIP
0501: LLKVLEYLPR GSPSEACLMK IFVATVETIL SRTFPPETSI RKARASLATR SSATKNLAMA ELRAMVHALF LESCAGVEIA SRLLFVVLTV CVSHEAQSSG
0601: SKRRRSEEDA TAEENQDNQT SNRKSRNVKG QGPVAAFDSY VLAAVCALAC EVQLYPMISG GGNFSNSAVA ATITKSVKIN GSSNEYGAGI DSAIKHTRRI
0701: LAILEALFSL KPSSVGTPWS YSSSEIVAAA MVAAHISELF RRSKALTHAL SGLMRCKWDK EIHKRASSLY NLIDVHSKVV ASIVDKAEPL EAYLKNAPVQ
0801: KDSLACVNWK QQNNTSSAAG FGTAAVTSTS RNEMAPRGGN HKYARHSDEG SGSRSSSDKG IKDLLLDASD LANFLTADRL AGFYRGTQVL LRSILAEKPE
0901: LSFSVVSLLW HKLIASPEIQ PTAESTSAQQ GWRQVVDALC NVVSATPAKA AAAVVLQAER ELQPWIAKDD EEGQKMWKIN QRIVKVMVEL MRNHDRPESL
1001: VILASASDLL LRATDGMLVD GEACTLPQLE LLEATARAIQ PVLAWGPSGL AVVDGLSNLL KCRLPATIRC LSHPSAHVRA LSTSVLRDIM NQSGITTTKA
1101: TPKPPPTITT EKNGTDSPSY RFFNAAAIDW KADIQKCLNW EAHSLLSTTM PTQFLDTAAR ELGCTISMSS Q
0101: VYSKEAHPFA SFISLVSPNS ENDYSEQWAL ACGEILRILT HYNRPIYKTE QQNGETESKA STSGSPTLSE AKAVSPGQHE RKPLRPLSPW ISDILLAAPL
0201: GIRSDYFRWC SGVMGKYAAG ELKPPTIATR GSGKHPQYMP STPRWAVANG AGVILSVCDD EVARYETATL TAVAVPALLL PPPTTSLDEH LVAGLPALEP
0301: YARLFHRYYA IATPSATQRL LLGLLEAPPS WAPDALDAAV QLVELLRAAE DYASGVRLPR NWMHLHFLRA IGIAMSMRAG VAADAAAALL FRILSQPALL
0401: FPPLSQAEGV EIKHAPIGGY GSNYRKQIEV PAAEATIEAT AQGIASMLCA HGPEVEWRIC TIWEAAYGLI PLNSSAVDLP EIIVATPLQP PILSWNLYIP
0501: LLKVLEYLPR GSPSEACLMK IFVATVETIL SRTFPPETSI RKARASLATR SSATKNLAMA ELRAMVHALF LESCAGVEIA SRLLFVVLTV CVSHEAQSSG
0601: SKRRRSEEDA TAEENQDNQT SNRKSRNVKG QGPVAAFDSY VLAAVCALAC EVQLYPMISG GGNFSNSAVA ATITKSVKIN GSSNEYGAGI DSAIKHTRRI
0701: LAILEALFSL KPSSVGTPWS YSSSEIVAAA MVAAHISELF RRSKALTHAL SGLMRCKWDK EIHKRASSLY NLIDVHSKVV ASIVDKAEPL EAYLKNAPVQ
0801: KDSLACVNWK QQNNTSSAAG FGTAAVTSTS RNEMAPRGGN HKYARHSDEG SGSRSSSDKG IKDLLLDASD LANFLTADRL AGFYRGTQVL LRSILAEKPE
0901: LSFSVVSLLW HKLIASPEIQ PTAESTSAQQ GWRQVVDALC NVVSATPAKA AAAVVLQAER ELQPWIAKDD EEGQKMWKIN QRIVKVMVEL MRNHDRPESL
1001: VILASASDLL LRATDGMLVD GEACTLPQLE LLEATARAIQ PVLAWGPSGL AVVDGLSNLL KCRLPATIRC LSHPSAHVRA LSTSVLRDIM NQSGITTTKA
1101: TPKPPPTITT EKNGTDSPSY RFFNAAAIDW KADIQKCLNW EAHSLLSTTM PTQFLDTAAR ELGCTISMSS Q
0001: MASSSSSERW IDGLQFSSLL WPPPRDPQQH KDQVVAYVEY FGQFTSEQFP DDIAELVRHQ YPSTEKRLLD DVLAMFVLHH PEHGHAVILP IISCLIDGSL
0101: VYSKEAHPFA SFISLVCPSS ENDYSEQWAL ACGEILRILT HYNRPIYKTE QQNGDTERNC LSKATTSGSP TSEPKAGSPT QHERKPLRPL SPWISDILLA
0201: APLGIRSDYF RWCSGVMGKY AAGELKPPTI ASRGSGKHPQ LMPSTPRWAV ANGAGVILSV CDDEVARYET ATLTAVAVPA LLLPPPTTSL DEHLVAGLPA
0301: LEPYARLFHR YYAIATPSAT QRLLLGLLEA PPSWAPDALD AAVQLVELLR AAEDYASGVR LPRNWMHLHF LRAIGIAMSM RAGVAADAAA ALLFRILSQP
0401: ALLFPPLSQV EGVEIQHAPI GGYSSNYRKQ IEVPAAEATI EATAQGIASM LCAHGPEVEW RICTIWEAAY GLIPLNSSAV DLPEIIVATP LQPPILSWNL
0501: YIPLLKVLEY LPRGSPSEAC LMKIFVATVE TILSRTFPPE SSRELTRKAR SSFTTRSATK NLAMSELRAM VHALFLESCA GVELASRLLF VVLTVCVSHE
0601: AQSSGSKRPR SEYASTTENI EANQPVSNNQ TANRKSRNVK GQGPVAAFDS YVLAAVCALA CEVQLYPMIS GGGNFSNSAV AGTITKPVKI NGSSKEYGAG
0701: IDSAISHTRR ILAILEALFS LKPSSVGTPW SYSSSEIVAA AMVAAHISEL FRRSKALTHA LSGLMRCKWD KEIHKRASSL YNLIDVHSKV VASIVDKAEP
0801: LEAYLKNTPV QKDSVTCLNW KQENTCASTT CFDTAVTSAS RTEMNPRGNH KYARHSDEGS GRPSEKGIKD FLLDASDLAN FLTADRLAGF YCGTQKLLRS
0901: VLAEKPELSF SVVSLLWHKL IAAPEIQPTA ESTSAQQGWR QVVDALCNVV SATPAKAAAA VVLQAERELQ PWIAKDDEEG QKMWKINQRI VKVLVELMRN
1001: HDRPESLVIL ASASDLLLRA TDGMLVDGEA CTLPQLELLE ATARAIQPVL AWGPSGLAVV DGLSNLLKCR LPATIRCLSH PSAHVRALST SVLRDIMNQS
1101: SIPIKVTPKL PTTEKNGMNS PSYRFFNAAS IDWKADIQNC LNWEAHSLLS TTMPTQFLDT AARELGCTIS LSQ
0101: VYSKEAHPFA SFISLVCPSS ENDYSEQWAL ACGEILRILT HYNRPIYKTE QQNGDTERNC LSKATTSGSP TSEPKAGSPT QHERKPLRPL SPWISDILLA
0201: APLGIRSDYF RWCSGVMGKY AAGELKPPTI ASRGSGKHPQ LMPSTPRWAV ANGAGVILSV CDDEVARYET ATLTAVAVPA LLLPPPTTSL DEHLVAGLPA
0301: LEPYARLFHR YYAIATPSAT QRLLLGLLEA PPSWAPDALD AAVQLVELLR AAEDYASGVR LPRNWMHLHF LRAIGIAMSM RAGVAADAAA ALLFRILSQP
0401: ALLFPPLSQV EGVEIQHAPI GGYSSNYRKQ IEVPAAEATI EATAQGIASM LCAHGPEVEW RICTIWEAAY GLIPLNSSAV DLPEIIVATP LQPPILSWNL
0501: YIPLLKVLEY LPRGSPSEAC LMKIFVATVE TILSRTFPPE SSRELTRKAR SSFTTRSATK NLAMSELRAM VHALFLESCA GVELASRLLF VVLTVCVSHE
0601: AQSSGSKRPR SEYASTTENI EANQPVSNNQ TANRKSRNVK GQGPVAAFDS YVLAAVCALA CEVQLYPMIS GGGNFSNSAV AGTITKPVKI NGSSKEYGAG
0701: IDSAISHTRR ILAILEALFS LKPSSVGTPW SYSSSEIVAA AMVAAHISEL FRRSKALTHA LSGLMRCKWD KEIHKRASSL YNLIDVHSKV VASIVDKAEP
0801: LEAYLKNTPV QKDSVTCLNW KQENTCASTT CFDTAVTSAS RTEMNPRGNH KYARHSDEGS GRPSEKGIKD FLLDASDLAN FLTADRLAGF YCGTQKLLRS
0901: VLAEKPELSF SVVSLLWHKL IAAPEIQPTA ESTSAQQGWR QVVDALCNVV SATPAKAAAA VVLQAERELQ PWIAKDDEEG QKMWKINQRI VKVLVELMRN
1001: HDRPESLVIL ASASDLLLRA TDGMLVDGEA CTLPQLELLE ATARAIQPVL AWGPSGLAVV DGLSNLLKCR LPATIRCLSH PSAHVRALST SVLRDIMNQS
1101: SIPIKVTPKL PTTEKNGMNS PSYRFFNAAS IDWKADIQNC LNWEAHSLLS TTMPTQFLDT AARELGCTIS LSQ
Arabidopsis Description
GIProtein GIGANTEA [Source:UniProtKB/Swiss-Prot;Acc:Q9SQI2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.