Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 2
- cytosol 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr3P22610_001 | |
| GSMUA_Achr7P11200_001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G22770.1 | GSMUA_Achr7P11200_001 | AT1G68050.1 | 17704763 |
| AT1G22770.1 | GSMUA_Achr7P11200_001 | AT1G68050.1 | 17872410 |
| AT1G22770.1 | GSMUA_Achr3P22610_001 | AT3G11540.1 | 15155885 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU3Hr1G021140.2 | Barley | plastid | 79.87 | 50.77 |
| GSMUA_Achr7P09770_001 | Banana | cytosol | 82.77 | 45.25 |
| GSMUA_Achr10P... | Banana | cytosol | 83.41 | 44.24 |
| Os01t0182600-03 | Rice | nucleus | 81.16 | 43.45 |
| TraesCS3B01G135400.1 | Wheat | cytosol, nucleus, plasma membrane | 79.71 | 42.86 |
| TraesCS3A01G116300.1 | Wheat | cytosol, nucleus, plasma membrane | 79.71 | 42.86 |
| KXG31676 | Sorghum | nucleus | 80.19 | 42.86 |
| TraesCS3D01G118200.2 | Wheat | nucleus | 79.55 | 42.84 |
| Zm00001d008826_P078 | Maize | nucleus | 80.35 | 42.22 |
| Zm00001d039589_P136 | Maize | plasma membrane | 79.71 | 41.98 |
| KRH08640 | Soybean | cytosol | 71.98 | 40.86 |
| VIT_18s0157g00020.t01 | Wine grape | cytosol, peroxisome, plasma membrane | 76.97 | 40.85 |
| Solyc04g071990.2.1 | Tomato | cytosol | 73.91 | 39.33 |
| KRH35085 | Soybean | cytosol, nucleus, plasma membrane | 73.59 | 38.83 |
| Solyc12g056650.1.1 | Tomato | nucleus | 72.79 | 38.73 |
| AT1G22770.1 | Thale cress | cytosol | 73.11 | 38.7 |
| KRG91704 | Soybean | cytosol | 73.27 | 38.62 |
| Bra024536.1-P | Field mustard | cytosol, nucleus, plasma membrane | 72.62 | 38.51 |
| CDY21388 | Canola | cytosol, nucleus, plasma membrane | 72.3 | 38.34 |
| CDY04787 | Canola | cytosol, nucleus, plasma membrane | 71.98 | 38.21 |
| PGSC0003DMT400048370 | Potato | nucleus, plasma membrane, plastid | 40.42 | 28.43 |
| PGSC0003DMT400002842 | Potato | plastid | 0.48 | 2.68 |
| GSMUA_Achr10P... | Banana | cytosol, mitochondrion, nucleus, plastid | 0.32 | 0.5 |
| HORVU3Hr1G021150.2 | Barley | cytosol | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr10P21020_001 | EnsemblPlants:GSMUA_Achr10T21020_001 | EnsemblPlantsGene:GSMUA_Achr10G21020_001 | GO:GO:0000003 | GO:GO:0007275 | GO:GO:0008150 |
| GO:GO:0009628 | GO:GO:0009791 | GO:GO:2000028 | InterPro:GIGANTEA | PANTHER:PTHR36319 | PRINTS:PR02081 |
| SEG:seg | UniParc:UPI00029589B6 | UniProt:M0RK27 | MapMan:26.1.2.3.2 | : | : |
Description
Protein GIGANTEA [Source:GMGC_GENE;Acc:GSMUA_Achr10G21020_001]
Coordinates
chr10:-:26812167..26818935
Molecular Weight (calculated)
68858.8 Da
IEP (calculated)
6.442
GRAVY (calculated)
-0.072
Length
621 amino acids
Sequence
(BLAST)
(BLAST)
001: MSASHGKWTN GLQFSSLFWP PPLGEQQKQA QVMAYVEYFG QFTSEEFQED IAQLIQSHYP SKDKRLLDEV LAVFVLHHPE HGHAIIHPIL SLIIDGTLAY
101: DRNDSPFCSF ISLFKQNSEK EYSEQWALAC GEILRVLTHY NRPIHKVEHH NVEYERSNSD NRATTSKSKQ EEANHPLQQE DRKPLRPLSP WITDILLAAP
201: LGIRSDYFRW CGGVMGKYAA GGDLKPPTTA CSRGSGKHQL MQSTPRWAVA NGAGVILSVC DEEVARYETA NLTAAAVPAL LLPPPTNALD EHLDAALPAL
301: EPYACLFHRY YALATPSATQ RLLLGLLEAP PSWAPDALDA AVQLVELLRA AEDYASGVKL PRNWMHLHFL RAIGIAMSMR VGIAADAAAA LLFRILSQPT
401: LLFPPLRHAE GIKVHHEPVD GYISPYKRQI EASICDATIE ATAQGIASML CAHGPDVEWR ICTIWEAAYG LLPLSSAVVD LPEIVVAAPL QPPPLSWNLY
501: LPLLKVLEYL PQGSPSEACL MRIFVATVET VLRRTFPSEN SEQPRKPRGH GSMWSTTKNL AVAELHTMIH SLFLESCASM DLASRLLFVV LTICVSHDAL
601: PDGSKRPTEN KGQLQHLILM F
101: DRNDSPFCSF ISLFKQNSEK EYSEQWALAC GEILRVLTHY NRPIHKVEHH NVEYERSNSD NRATTSKSKQ EEANHPLQQE DRKPLRPLSP WITDILLAAP
201: LGIRSDYFRW CGGVMGKYAA GGDLKPPTTA CSRGSGKHQL MQSTPRWAVA NGAGVILSVC DEEVARYETA NLTAAAVPAL LLPPPTNALD EHLDAALPAL
301: EPYACLFHRY YALATPSATQ RLLLGLLEAP PSWAPDALDA AVQLVELLRA AEDYASGVKL PRNWMHLHFL RAIGIAMSMR VGIAADAAAA LLFRILSQPT
401: LLFPPLRHAE GIKVHHEPVD GYISPYKRQI EASICDATIE ATAQGIASML CAHGPDVEWR ICTIWEAAYG LLPLSSAVVD LPEIVVAAPL QPPPLSWNLY
501: LPLLKVLEYL PQGSPSEACL MRIFVATVET VLRRTFPSEN SEQPRKPRGH GSMWSTTKNL AVAELHTMIH SLFLESCASM DLASRLLFVV LTICVSHDAL
601: PDGSKRPTEN KGQLQHLILM F
0001: MASSSSSERW IDGLQFSSLL WPPPRDPQQH KDQVVAYVEY FGQFTSEQFP DDIAELVRHQ YPSTEKRLLD DVLAMFVLHH PEHGHAVILP IISCLIDGSL
0101: VYSKEAHPFA SFISLVCPSS ENDYSEQWAL ACGEILRILT HYNRPIYKTE QQNGDTERNC LSKATTSGSP TSEPKAGSPT QHERKPLRPL SPWISDILLA
0201: APLGIRSDYF RWCSGVMGKY AAGELKPPTI ASRGSGKHPQ LMPSTPRWAV ANGAGVILSV CDDEVARYET ATLTAVAVPA LLLPPPTTSL DEHLVAGLPA
0301: LEPYARLFHR YYAIATPSAT QRLLLGLLEA PPSWAPDALD AAVQLVELLR AAEDYASGVR LPRNWMHLHF LRAIGIAMSM RAGVAADAAA ALLFRILSQP
0401: ALLFPPLSQV EGVEIQHAPI GGYSSNYRKQ IEVPAAEATI EATAQGIASM LCAHGPEVEW RICTIWEAAY GLIPLNSSAV DLPEIIVATP LQPPILSWNL
0501: YIPLLKVLEY LPRGSPSEAC LMKIFVATVE TILSRTFPPE SSRELTRKAR SSFTTRSATK NLAMSELRAM VHALFLESCA GVELASRLLF VVLTVCVSHE
0601: AQSSGSKRPR SEYASTTENI EANQPVSNNQ TANRKSRNVK GQGPVAAFDS YVLAAVCALA CEVQLYPMIS GGGNFSNSAV AGTITKPVKI NGSSKEYGAG
0701: IDSAISHTRR ILAILEALFS LKPSSVGTPW SYSSSEIVAA AMVAAHISEL FRRSKALTHA LSGLMRCKWD KEIHKRASSL YNLIDVHSKV VASIVDKAEP
0801: LEAYLKNTPV QKDSVTCLNW KQENTCASTT CFDTAVTSAS RTEMNPRGNH KYARHSDEGS GRPSEKGIKD FLLDASDLAN FLTADRLAGF YCGTQKLLRS
0901: VLAEKPELSF SVVSLLWHKL IAAPEIQPTA ESTSAQQGWR QVVDALCNVV SATPAKAAAA VVLQAERELQ PWIAKDDEEG QKMWKINQRI VKVLVELMRN
1001: HDRPESLVIL ASASDLLLRA TDGMLVDGEA CTLPQLELLE ATARAIQPVL AWGPSGLAVV DGLSNLLKCR LPATIRCLSH PSAHVRALST SVLRDIMNQS
1101: SIPIKVTPKL PTTEKNGMNS PSYRFFNAAS IDWKADIQNC LNWEAHSLLS TTMPTQFLDT AARELGCTIS LSQ
0101: VYSKEAHPFA SFISLVCPSS ENDYSEQWAL ACGEILRILT HYNRPIYKTE QQNGDTERNC LSKATTSGSP TSEPKAGSPT QHERKPLRPL SPWISDILLA
0201: APLGIRSDYF RWCSGVMGKY AAGELKPPTI ASRGSGKHPQ LMPSTPRWAV ANGAGVILSV CDDEVARYET ATLTAVAVPA LLLPPPTTSL DEHLVAGLPA
0301: LEPYARLFHR YYAIATPSAT QRLLLGLLEA PPSWAPDALD AAVQLVELLR AAEDYASGVR LPRNWMHLHF LRAIGIAMSM RAGVAADAAA ALLFRILSQP
0401: ALLFPPLSQV EGVEIQHAPI GGYSSNYRKQ IEVPAAEATI EATAQGIASM LCAHGPEVEW RICTIWEAAY GLIPLNSSAV DLPEIIVATP LQPPILSWNL
0501: YIPLLKVLEY LPRGSPSEAC LMKIFVATVE TILSRTFPPE SSRELTRKAR SSFTTRSATK NLAMSELRAM VHALFLESCA GVELASRLLF VVLTVCVSHE
0601: AQSSGSKRPR SEYASTTENI EANQPVSNNQ TANRKSRNVK GQGPVAAFDS YVLAAVCALA CEVQLYPMIS GGGNFSNSAV AGTITKPVKI NGSSKEYGAG
0701: IDSAISHTRR ILAILEALFS LKPSSVGTPW SYSSSEIVAA AMVAAHISEL FRRSKALTHA LSGLMRCKWD KEIHKRASSL YNLIDVHSKV VASIVDKAEP
0801: LEAYLKNTPV QKDSVTCLNW KQENTCASTT CFDTAVTSAS RTEMNPRGNH KYARHSDEGS GRPSEKGIKD FLLDASDLAN FLTADRLAGF YCGTQKLLRS
0901: VLAEKPELSF SVVSLLWHKL IAAPEIQPTA ESTSAQQGWR QVVDALCNVV SATPAKAAAA VVLQAERELQ PWIAKDDEEG QKMWKINQRI VKVLVELMRN
1001: HDRPESLVIL ASASDLLLRA TDGMLVDGEA CTLPQLELLE ATARAIQPVL AWGPSGLAVV DGLSNLLKCR LPATIRCLSH PSAHVRALST SVLRDIMNQS
1101: SIPIKVTPKL PTTEKNGMNS PSYRFFNAAS IDWKADIQNC LNWEAHSLLS TTMPTQFLDT AARELGCTIS LSQ
Arabidopsis Description
GIProtein GIGANTEA [Source:UniProtKB/Swiss-Prot;Acc:Q9SQI2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.