Factsheet for Os01t0758200-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
nucleus 4
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	nucleus

mitochondrion: 15069638
nucleus: 15276429

msms PMID: 15276429 doi

MM Khan, S Komatsu

Department of Molecular Genetics, National Institute of Agrobiological Sciences, Kannondai 2-1-2, Tsukuba 305-8602, Japan.

msms PMID: 15069638 doi

N Tanaka, M Fujita, H Handa, S Murayama, M Uemura, Y Kawamura, T Mitsui, S Mikami, Y Tozawa, T Yoshinaga, S Komatsu

Department of Molecular Genetics, National Institute of Agrobiological Sciences, 305-8602, Tsukuba, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU3Hr1G072970.1	Barley	nucleus	67.77	70.79
TraesCS3A01G306800.1	Wheat	nucleus	67.77	70.79
TraesCS3B01G329700.1	Wheat	nucleus	67.77	70.1
TraesCS3D01G295100.1	Wheat	nucleus	64.93	68.5
Zm00001d012703_P001	Maize	nucleus	59.24	56.05
GSMUA_Achr2P09110_001	Banana	nucleus	30.33	53.78
Zm00001d043402_P001	Maize	nucleus	64.45	52.31
KXG33408	Sorghum	nucleus	62.09	50.38
GSMUA_Achr4P08020_001	Banana	nucleus	35.55	49.67
GSMUA_Achr4P15140_001	Banana	nucleus	35.07	49.66
GSMUA_Achr9P06430_001	Banana	nucleus	35.07	48.05
Os10t0406300-01	Rice	nucleus	27.01	29.38
Os04t0678400-01	Rice	plastid	21.33	21.84
Os09t0475800-01	Rice	nucleus	21.8	20.0
Os08t0490100-01	Rice	nucleus	23.7	18.12
Os01t0673700-00	Rice	nucleus	24.17	15.5
Os03t0169600-01	Rice	nucleus	32.23	15.45
Os07t0685000-02	Rice	nucleus	27.49	12.18
Os01t0264000-01	Rice	nucleus	27.01	11.49
Os01t0277500-01	Rice	nucleus	29.86	11.37

Protein Annotations

MapMan:15.5.1.5	EntrezGene:4325308	EMBL:AB028133	ProteinID:ACT83312.1	EMBL:AK071083	ProteinID:BAD87583.1
ProteinID:BAF06214.1	ProteinID:BAS74425.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0046872
EMBL:HQ858825	InterPro:IPR003851	EnsemblPlantsGene:Os01g0758200	EnsemblPlants:Os01t0758200-01	PFAM:PD007478	PFAM:PF02701
ScanProsite:PS01361	PFscan:PS50884	PANTHER:PTHR31089	PANTHER:PTHR31089:SF14	UniProt:Q5JLR7	UniParc:UPI00004C2A0D
RefSeq:XP_015630447.1	InterPro:Znf_Dof	SEG:seg	:	:	:

Description

DNA BINDING WITH ONE FINGER 6Similar to Dof2 (Fragment). (Os01t0758200-01)

Coordinates

chr1:-:31850541..31851617

Molecular Weight (calculated)

23096.0 Da

IEP (calculated)

9.083

GRAVY (calculated)

-0.759

Length

211 amino acids

Sequence
(BLAST)

001: MLSHVEMAPA AGGFKLFGKV IMQCGVSEGT QDKAQGFVVA REKVEPEEEE EEEQRVPAAA TSGQRASIKR EAADRDEEQR QGGGDAAGQP TQRRLQDSAE
101: ARAAAAAPLP CPRCRSRDTK FCYFNNYNVN QPRHFCKACH RYWTAGGALR NVPVGAGRRK NRPLGPLAVA HHNHHHRAAA GFVLGFPNPS SPTSPSPVYT
201: DRWPVTPDRP F

Best Arabidopsis Sequence Match ( AT5G62430.1 )
(BLAST)

001: MLETKDPAIK LFGMKIPFPT VLEVADEEEE KNQNKTLTDQ SEKDKTLKKP TKILPCPRCN SMETKFCYYN NYNVNQPRHF CKACQRYWTS GGTMRSVPIG
101: AGRRKNKNNS PTSHYHHVTI SETNGPVLSF SLGDDQKVSS NRFGNQKLVA RIENNDERSN NNTSNGLNCF PGVSWPYTWN PAFYPVYPYW SMPVLSSPVS
201: SSPTSTLGKH SRDEDETVKQ KQRNGSVLVP KTLRIDDPNE AAKSSIWTTL GIKNEVMFNG FGSKKEVKLS NKEETETSLV LCANPAALSR SINFHEQM

Arabidopsis Description

CDF1Cyclic dof factor 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8W1E3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.