Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d031278_P001 | Maize | nucleus | 55.43 | 63.75 |
| OQU81009 | Sorghum | nucleus | 57.61 | 60.0 |
| Os09t0475800-01 | Rice | nucleus | 46.74 | 56.09 |
| Os01t0758200-01 | Rice | nucleus | 18.12 | 23.7 |
| Os04t0678400-01 | Rice | plastid | 16.3 | 21.84 |
| Os10t0406300-01 | Rice | nucleus | 14.86 | 21.13 |
| Os01t0673700-00 | Rice | nucleus | 21.01 | 17.63 |
| Os03t0169600-01 | Rice | nucleus | 22.46 | 14.09 |
| Os07t0685000-02 | Rice | nucleus | 22.1 | 12.82 |
| Os01t0264000-01 | Rice | nucleus | 20.65 | 11.49 |
| Os01t0277500-01 | Rice | nucleus | 17.03 | 8.48 |
Protein Annotations
| MapMan:15.5.1.5 | EntrezGene:4345900 | EMBL:AK241364 | ProteinID:BAD09665.1 | ProteinID:BAF24024.2 | ProteinID:BAT06010.1 |
| ProteinID:EAZ43158.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR003851 | EnsemblPlantsGene:Os08g0490100 | EnsemblPlants:Os08t0490100-01 |
| PFAM:PD007478 | PFAM:PF02701 | ScanProsite:PS01361 | PFscan:PS50884 | PANTHER:PTHR31992 | PANTHER:PTHR31992:SF68 |
| UniProt:Q6ZBQ1 | UniParc:UPI000023AEC3 | RefSeq:XP_015650493.1 | InterPro:Znf_Dof | SEG:seg | : |
Description
DNA BINDING WITH ONE FINGER 24Similar to PBF protein. (Os08t0490100-01)
Coordinates
chr8:+:24232676..24233936
Molecular Weight (calculated)
28858.2 Da
IEP (calculated)
7.210
GRAVY (calculated)
-0.550
Length
276 amino acids
Sequence
(BLAST)
(BLAST)
001: MQEQQPETGR RPAQQFATVD LRRPKGYAAA PATPQPGSAA TAAAAAGPAA TAAAAAAGEG DPCPRCESRD TKFCYYNNYN TSQPRHFCKC CRRYWTKGGT
101: LRNVPVGGGT RKKSSSSSSS SSSSSAAAAA PAAKRQKTSK KRRVTTPEPL AATTPVLTEA AADSAAKTTT EATSEKKTTT STTTTTPPAP DTTSEITTEL
201: VVPAVEEDSF TDLLQPDSAA VTLGLDFSDY PSITKSLADP DLHFEWPPPA FDMASYWPAG AGFADPDPTA VFLNLP
101: LRNVPVGGGT RKKSSSSSSS SSSSSAAAAA PAAKRQKTSK KRRVTTPEPL AATTPVLTEA AADSAAKTTT EATSEKKTTT STTTTTPPAP DTTSEITTEL
201: VVPAVEEDSF TDLLQPDSAA VTLGLDFSDY PSITKSLADP DLHFEWPPPA FDMASYWPAG AGFADPDPTA VFLNLP
001: MPTSDSGEPR RIAMKPNGVT VPISDQQEQL PCPRCDSSNT KFCYYNNYNF SQPRHFCKAC RRYWTHGGTL RDVPVGGGTR KSAKRSRTCS NSSSSSVSGV
101: VSNSNGVPLQ TTPVLFPQSS ISNGVTHTVT ESDGKGSALS LCGSFTSTLL NHNAAATATH GSGSVIGIGG FGIGLGSGFD DVSFGLGRAM WPFSTVGTAT
201: TTNVGSNGGH HAVPMPATWQ FEGLESNAGG GFVSGEYFAW PDLSITTPGN SLK
101: VSNSNGVPLQ TTPVLFPQSS ISNGVTHTVT ESDGKGSALS LCGSFTSTLL NHNAAATATH GSGSVIGIGG FGIGLGSGFD DVSFGLGRAM WPFSTVGTAT
201: TTNVGSNGGH HAVPMPATWQ FEGLESNAGG GFVSGEYFAW PDLSITTPGN SLK
Arabidopsis Description
DOF3.4OBP1 [Source:UniProtKB/TrEMBL;Acc:A0A178VFT5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.