CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 1
nucleus 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	secretory
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d043402_P001	Maize	nucleus	83.08	83.08
Zm00001d012703_P001	Maize	nucleus	68.46	79.82
TraesCS3A01G306800.1	Wheat	nucleus	50.0	64.36
TraesCS3B01G329700.1	Wheat	nucleus	49.62	63.24
HORVU3Hr1G072970.1	Barley	nucleus	48.85	62.87
Os01t0758200-01	Rice	nucleus	50.38	62.09
TraesCS3D01G295100.1	Wheat	nucleus	47.69	62.0
GSMUA_Achr2P09110_001	Banana	nucleus	24.62	53.78
GSMUA_Achr4P08020_001	Banana	nucleus	28.46	49.01
GSMUA_Achr4P15140_001	Banana	nucleus	27.69	48.32
GSMUA_Achr9P06430_001	Banana	nucleus	26.54	44.81
OQU78298	Sorghum	mitochondrion, nucleus, plastid	32.31	38.89
OQU87316	Sorghum	nucleus	18.85	29.17
KXG31638	Sorghum	nucleus	19.62	21.7
EES13107	Sorghum	nucleus	16.92	19.64
OQU89656	Sorghum	nucleus	16.92	17.46
OQU81009	Sorghum	nucleus	17.69	17.36
EES17301	Sorghum	nucleus	17.31	16.36
EER95426	Sorghum	nucleus	24.23	14.86
EER91636	Sorghum	nucleus	26.92	14.71
EER91220	Sorghum	plastid	19.23	14.24
EES00579	Sorghum	nucleus	25.38	12.89
OQU90492	Sorghum	nucleus	22.31	11.98
EES02731	Sorghum	nucleus	25.38	11.79

Protein Annotations

MapMan:15.5.1.5	UniProt:A0A1B6Q662	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR003851	EnsemblPlants:KXG33408
ProteinID:KXG33408	ProteinID:KXG33408.1	PFAM:PD007478	PFAM:PF02701	ScanProsite:PS01361	PFscan:PS50884
PANTHER:PTHR31089	PANTHER:PTHR31089:SF14	EnsemblPlantsGene:SORBI_3003G301700	UniParc:UPI00081AEAD3	InterPro:Znf_Dof	SEG:seg

Description

hypothetical protein

Coordinates

chr3:-:63242415..63244786

Molecular Weight (calculated)

27856.5 Da

IEP (calculated)

9.135

GRAVY (calculated)

-0.626

Length

260 amino acids

Sequence
(BLAST)

001: MLSHVEMAPA AGGFKLFGKV ITRTQCAAET APPAVPTQEQ EPAAAASRST AAFARERDDP DERDQPMVKR EAAAAAASDH DFVVVADKQQ QQHSAAAGGP
101: APASESDDSK GQQQHPRPRQ HHQQQHQDTV EARAAAAASS APPLPCPRCR SRNTKFCYFN NYNVNQPRHF CKDCHRYWTA GGALRNVPVG AGRRKNRPLG
201: PVGAVPVPVP VPVPVPAHLH PAAAAGFVLG FPGQHPSSPT TSPSTAVYAE RWPVCPDRRF

Best Arabidopsis Sequence Match ( AT1G29160.1 )
(BLAST)

001: MATQDSQGIK LFGKTITFNA NITQTIKKEE QQQQQQPELQ ATTAVRSPSS DLTAEKRPDK IIPCPRCKSM ETKFCYFNNY NVNQPRHFCK GCQRYWTAGG
101: ALRNVPVGAG RRKSKPPGRV GGFAELLGAA TGAVDQVELD ALLVEEWRAA TASHGGFRHD FPVKRLRCYT DGQSC

Arabidopsis Description

DOF1.5Uncharacterized protein At1g29160 (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SUY0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.