CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d032999_P001	Maize	nucleus	75.63	80.0
Zm00001d014198_P001	Maize	nucleus	57.35	62.9
Os10t0406300-01	Rice	nucleus	25.42	62.37
EER95426	Sorghum	nucleus	49.37	55.42
OQU90492	Sorghum	nucleus	30.46	29.96
OQU78298	Sorghum	mitochondrion, nucleus, plastid	13.24	29.17
EES02731	Sorghum	nucleus	33.61	28.57
OQU87316	Sorghum	nucleus	9.87	27.98
KXG33408	Sorghum	nucleus	14.71	26.92
EES00579	Sorghum	nucleus	28.15	26.17
KXG31638	Sorghum	nucleus	11.97	24.26
OQU81009	Sorghum	nucleus	13.03	23.4
OQU89656	Sorghum	nucleus	11.97	22.62
EES17301	Sorghum	nucleus	12.61	21.82
EES13107	Sorghum	nucleus	10.08	21.43
EER91220	Sorghum	plastid	14.08	19.09

Protein Annotations

MapMan:15.5.1.5	EntrezGene:8064932	UniProt:C5WM75	EnsemblPlants:EER91636	ProteinID:EER91636	ProteinID:EER91636.1
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	InterPro:IPR003851	PFAM:PD007478	PFAM:PF02701	ScanProsite:PS01361
PFscan:PS50884	PANTHER:PTHR31089	PANTHER:PTHR31089:SF12	EnsemblPlantsGene:SORBI_3001G252800	unigene:Sbi.19018	UniParc:UPI0001A82055
RefSeq:XP_002464638.1	InterPro:Znf_Dof	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr1:+:27432058..27435050

Molecular Weight (calculated)

49780.6 Da

IEP (calculated)

6.775

GRAVY (calculated)

-0.649

Length

476 amino acids

Sequence
(BLAST)

001: MMAECQGGGG GDFLIKLFGK TIPVPESGDA KDLQQSSSSS SSTEQDHQDA HALDQENPHP DSSDPSPQPE VVDAEDPKSS PETTHQKPGQ GNGSGDAASQ
101: REKLKKPDKV LPCPRCNSMD TKFCYFNNYN VNQPRHFCKN CQRYWTAGGA MRNVPVGAGR RKNKNAVAAS HFLHRVGAAC GGGGDTLKTT NGTVLSFGGH
201: GGGCVPPGPA CLDLVEQLSH HLAAPVIRNA GNNPGPCSEG SSNCRDDNKT INDRSCVDEA AAANGDDGSV QHPASMNNGG ATVWPPPYSC APSPAAYFSS
301: GIAIPIYPAA PGYWGCMVPG AWSLPWPVQQ PPSSQSQGPA AGLSSSTSPT TTSAPSVSSS GAADSHTLGL GKHPRDREEG DDGRNAKVWA PKTIRIDDVD
401: EVARSSIWSL IGIKGDKAKQ QDDDAAGGHK QKQLVGMVFE PKREATKKPA AMMTSSPLLH ANPVALTRSV AFQEGS

Best Arabidopsis Sequence Match ( AT5G39660.3 )
(BLAST)

001: MADPAIKLFG KTIPLPELGV VDSSSSYTGF LTETQIPVRL SDSCTGDDDD EEMGDSGLGR EEGDDVGDGG GESETDKKEE KDSECQEESL RNESNDVTTT
101: TSGITEKTET TKAAKTNEES GGTACSQEGK LKKPDKILPC PRCNSMETKF CYYNNYNVNQ PRHFCKKCQR YWTAGGTMRN VPVGAGRRKN KSPASHYNRH
201: VSITSAEAMQ KVARTDLQHP NGANLLTFGS DSVLCESMAS GLNLVEKSLL KTQTVLQEPN EGLKITVPLN QTNEEAGTVS PLPKVPCFPG PPPTWPYAWN
301: GVSWTILPFY PPPAYWSCPG VSPGAWNSFT WMPQPNSPSG SNPNSPTLGK HSRDENAAEP GTAFDETESL GREKSKPERC LWVPKTLRID DPEEAAKSSI
401: WETLGIKKDE NADTFGAFRS STKEKSSLSE GRLPGRRPEL QANPAALSRS ANFHESS

Arabidopsis Description

CDF2Cyclic dof factor 2 [Source:UniProtKB/Swiss-Prot;Acc:Q93ZL5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.