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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 3
  • cytosol 2
  • mitochondrion 1
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • plasma membrane 1
  • golgi 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, mitochondrion, nucleus, secretory
BaCelLo:nucleus
MultiLoc:cytosol
Plant-mPloc:nucleus
Predotar:secretory
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
Bra008624.1-P
Bra010975.1-P
Bra012496.1-P
Bra012623.1-P
Bra013277.1-P
Bra013278.1-P
Bra013279.1-P
Bra018343.1-P
Bra019509.1-P
Bra021603.1-P
Bra022568.1-P
Bra022774.1-P
Bra025115.1-P
Bra025379.1-P
Bra026548.1-P
Bra028662.1-P
Bra033088.1-P
Bra033788.1-P
Bra035247.1-P
Bra035784.1-P
Bra040093.1-P

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G51910.1 Bra010975.1-P AT1G24625.1 21798944
AT5G51910.1 Bra012496.1-P AT1G24625.1 21798944
AT5G51910.1 Bra025115.1-P AT2G03500.1 21798944
AT5G51910.1 Bra026548.1-P AT2G03500.1 21798944
AT5G51910.1 Bra018343.1-P AT2G30050.1 21798944
AT5G51910.1 Bra021603.1-P AT2G30050.1 21798944
AT5G51910.1 Bra022774.1-P AT2G30050.1 21798944
AT5G51910.1 Bra035784.1-P AT3G20420.1 21798944
AT5G51910.1 Bra025379.1-P AT3G29160.1 21798944
AT5G51910.1 Bra033088.1-P AT3G29160.1 21798944
AT5G51910.1 Bra019509.1-P AT3G47640.1 21798944
AT5G51910.1 Bra033788.1-P AT3G47640.1 21798944
AT5G51910.1 Bra035247.1-P AT4G11175.1 21798944
AT5G51910.1 Bra040093.1-P AT4G16760.1 21798944
AT5G51910.1 Bra012623.1-P AT4G18020.1 21798944
AT5G51910.1 Bra013277.1-P AT4G18020.1 21798944
AT5G51910.1 Bra013278.1-P AT4G18020.1 21798944
AT5G51910.1 Bra013279.1-P AT4G18020.1 21798944
AT5G51910.1 Bra028662.1-P AT5G08330.1 21798944
AT5G51910.1 Bra008624.1-P AT5G16320.1 21798944
AT5G51910.1 Bra022568.1-P AT5G51910.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY27099 Canola nucleus 93.27 99.28
CDX91612 Canola nucleus 91.25 94.1
AT5G51910.1 Thale cress nucleus 71.38 72.35
KRG91429 Soybean nucleus 47.47 43.25
KRH35393 Soybean nucleus 44.78 42.77
Bra000395.1-P Field mustard nucleus 42.09 40.19
Bra004929.1-P Field mustard nucleus 43.77 40.12
Solyc03g006800.1.1 Tomato nucleus 42.76 38.96
PGSC0003DMT400062327 Potato nucleus 44.78 36.34
GSMUA_Achr3P12320_001 Banana cytosol 23.23 34.16
Bra026506.1-P Field mustard cytosol, mitochondrion, nucleus 23.91 32.87
Bra028662.1-P Field mustard nucleus 23.23 30.13
GSMUA_Achr11P... Banana nucleus 22.9 30.09
Bra009338.1-P Field mustard nucleus 23.91 30.08
Bra005984.1-P Field mustard nucleus 23.57 29.91
GSMUA_Achr11P... Banana cytosol, peroxisome, plastid 31.31 29.25
GSMUA_Achr5P03320_001 Banana cytosol 18.52 29.1
TraesCS4A01G355900.1 Wheat nucleus 28.62 28.72
GSMUA_Achr4P27220_001 Banana nucleus 20.88 28.18
Bra009667.1-P Field mustard nucleus 23.23 27.6
GSMUA_Achr8P00050_001 Banana cytoskeleton, cytosol, peroxisome 31.65 27.41
Bra029366.1-P Field mustard cytosol 16.16 27.27
TraesCS5D01G516300.1 Wheat nucleus 31.31 27.03
TraesCS5B01G516200.1 Wheat cytosol, nucleus, peroxisome 31.65 26.93
Zm00001d031725_P001 Maize nucleus 31.65 26.86
OQU80770 Sorghum nucleus 31.99 26.46
Bra025528.1-P Field mustard nucleus 19.87 26.34
Bra039096.1-P Field mustard nucleus 24.24 25.9
Os08t0544800-01 Rice nucleus 31.99 25.47
HORVU5Hr1G117990.1 Barley cytosol, mitochondrion, nucleus 31.65 25.07
Bra004407.1-P Field mustard nucleus, plastid 26.6 24.61
Bra025244.1-P Field mustard nucleus 25.25 24.43
HORVU5Hr1G080210.1 Barley cytosol 22.22 24.18
Bra003986.1-P Field mustard cytosol 19.53 23.67
Bra007875.1-P Field mustard cytosol 19.19 23.17
TraesCS5A01G309300.1 Wheat cytosol, nucleus, peroxisome 26.26 23.08
TraesCS5D01G316300.1 Wheat nucleus 25.93 23.05
TraesCS5B01G310000.1 Wheat cytosol, nucleus, peroxisome 25.93 22.71
EER99208 Sorghum nucleus 24.92 22.7
Bra016090.1-P Field mustard nucleus 26.6 22.19
Bra008001.1-P Field mustard nucleus, plastid 26.94 21.39
Zm00001d006165_P001 Maize nucleus 23.23 20.91
Os09t0521300-00 Rice nucleus 25.93 20.21
Bra027886.1-P Field mustard nucleus, plastid 25.59 19.29
Bra018126.1-P Field mustard nucleus 28.28 18.03
Protein Annotations
MapMan:15.5.19EnsemblPlantsGene:Bra022568EnsemblPlants:Bra022568.1EnsemblPlants:Bra022568.1-PGO:GO:0003674GO:GO:0003676
GO:GO:0003677GO:GO:0005488GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005634
GO:GO:0006139GO:GO:0006351GO:GO:0006355GO:GO:0006950GO:GO:0008150GO:GO:0008152
GO:GO:0009058GO:GO:0009987GO:GO:0031347InterPro:IPR017887UniProt:M4E1C0PFAM:PF03634
PFscan:PS51369PANTHER:PTHR31072PANTHER:PTHR31072:SF15InterPro:TF_TCP_subgrInterPro:Transcription_factor_TCPUniParc:UPI000254719A
SEG:seg:::::
Description
AT5G51910 (E=1e-098) | TCP family transcription factor, putative
Coordinates
chrA02:+:8859663..8862947
Molecular Weight (calculated)
32153.7 Da
IEP (calculated)
6.687
GRAVY (calculated)
-0.613
Length
297 amino acids
Sequence
(BLAST)
001: MGKAWKHLGF WFFFGKMESN LEGKEAMAHL SDPDPETNRG MLLKQEDDDP NKQQEVGFLQ PVTAPKRPPS KDRHTKVEGR GRRIRMPAGC AARIFQLTRE
101: LGHKSDGETI RWLLERSEPA IIEATGTGTI PAIAVSVNGA LKIPTDSTPQ FESDGGSGKR RRRNCTSEFV DINRQDSSVT SGLAPITASS YGVNLMNVNA
201: QSFVPFWQTG FVTGGPNQMG HMWAIPTVAA PSFLNGGGTR PVPSYVSNTS DAEPQMGTSG GGGDEGTTQT LRDFSLETYD KKELQFLGGS GDNTSPS
Best Arabidopsis Sequence Match ( AT5G51910.2 )
(BLAST)
001: MESNHEGNAI QVIDQVTTMT HLSDPNPKTK PGMMLMKQED GYLQPVKTKP APKRPTSKDR HTKVEGRGRR IRMPAGCAAR VFQLTRELGH KSDGETIRWL
101: LERAEPAIIE ATGTGTVPAI AVSVNGTLKI PTSSPVLNDG GRDGDGDLIK KRRKRNCTSD FVDVNDSCHS SVTSGLAPIT ASNYGVNILN VNTQGFVPFW
201: PMGMGTAFVT GGPDQMGQMW AIPTVATAPF LNVGARPVSS YVSNASDAEA EMETSGGGTT QPLRDFSLEI YDKRELQFLG GSGNSSPSSC HET
Arabidopsis Description
TCP19Transcription factor TCP19 [Source:UniProtKB/Swiss-Prot;Acc:Q9LT89]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.