Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY27099 | Canola | nucleus | 72.01 | 75.63 |
| CDX91612 | Canola | nucleus | 71.67 | 72.92 |
| Bra022568.1-P | Field mustard | cytosol | 72.35 | 71.38 |
| KRG91429 | Soybean | nucleus | 50.51 | 45.4 |
| KRH35393 | Soybean | nucleus | 47.78 | 45.02 |
| Solyc03g006800.1.1 | Tomato | nucleus | 46.08 | 41.41 |
| PGSC0003DMT400062327 | Potato | nucleus | 48.81 | 39.07 |
| AT2G45680.1 | Thale cress | cytosol | 45.05 | 37.08 |
| GSMUA_Achr3P12320_001 | Banana | cytosol | 24.57 | 35.64 |
| GSMUA_Achr11P... | Banana | nucleus | 24.91 | 32.3 |
| AT5G08330.1 | Thale cress | nucleus | 25.6 | 31.38 |
| GSMUA_Achr4P27220_001 | Banana | nucleus | 23.55 | 31.36 |
| TraesCS4A01G355900.1 | Wheat | nucleus | 31.06 | 30.74 |
| GSMUA_Achr11P... | Banana | cytosol, peroxisome, plastid | 32.76 | 30.19 |
| GSMUA_Achr5P03320_001 | Banana | cytosol | 19.45 | 30.16 |
| AT5G23280.1 | Thale cress | nucleus | 25.6 | 30.0 |
| AT2G37000.1 | Thale cress | nucleus, plastid | 19.11 | 29.79 |
| AT3G45150.1 | Thale cress | nucleus | 16.72 | 29.7 |
| GSMUA_Achr8P00050_001 | Banana | cytoskeleton, cytosol, peroxisome | 33.79 | 28.86 |
| Zm00001d031725_P001 | Maize | nucleus | 34.47 | 28.86 |
| OQU80770 | Sorghum | nucleus | 34.81 | 28.41 |
| TraesCS5B01G516200.1 | Wheat | cytosol, nucleus, peroxisome | 33.45 | 28.08 |
| TraesCS5D01G516300.1 | Wheat | nucleus | 32.76 | 27.91 |
| Os08t0544800-01 | Rice | nucleus | 34.13 | 26.81 |
| AT1G35560.1 | Thale cress | nucleus, plastid | 30.72 | 26.39 |
| HORVU5Hr1G117990.1 | Barley | cytosol, mitochondrion, nucleus | 33.45 | 26.13 |
| AT1G69690.1 | Thale cress | nucleus, plastid | 27.99 | 25.23 |
| AT5G41030.1 | Thale cress | nucleus | 20.14 | 24.28 |
| AT3G27010.1 | Thale cress | nucleus | 25.26 | 23.57 |
| HORVU5Hr1G080210.1 | Barley | cytosol | 21.84 | 23.44 |
| EER99208 | Sorghum | nucleus | 25.26 | 22.7 |
| TraesCS5D01G316300.1 | Wheat | nucleus | 25.6 | 22.46 |
| TraesCS5A01G309300.1 | Wheat | cytosol, nucleus, peroxisome | 25.6 | 22.19 |
| TraesCS5B01G310000.1 | Wheat | cytosol, nucleus, peroxisome | 25.6 | 22.12 |
| Zm00001d006165_P001 | Maize | nucleus | 24.23 | 21.52 |
| AT1G72010.1 | Thale cress | nucleus, plastid | 26.62 | 20.8 |
| Os09t0521300-00 | Rice | nucleus | 26.28 | 20.21 |
| AT1G58100.1 | Thale cress | nucleus | 27.3 | 19.95 |
| AT3G47620.1 | Thale cress | nucleus | 27.3 | 16.36 |
Protein Annotations
| MapMan:15.5.19 | EntrezGene:835266 | UniProt:A0A178UCD4 | ProteinID:AED96144.1 | ProteinID:AED96145.1 | EMBL:AK118579 |
| ArrayExpress:AT5G51910 | EnsemblPlantsGene:AT5G51910 | RefSeq:AT5G51910 | TAIR:AT5G51910 | RefSeq:AT5G51910-TAIR-G | EnsemblPlants:AT5G51910.1 |
| TAIR:AT5G51910.1 | EMBL:AY086379 | Unigene:At.29652 | ProteinID:BAA97226.1 | EMBL:BT008779 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
| GO:GO:0006950 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0031347 |
| InterPro:IPR017887 | RefSeq:NP_200004.1 | RefSeq:NP_851173.1 | ProteinID:OAO90341.1 | PFAM:PF03634 | PO:PO:0000013 |
| PO:PO:0000037 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 |
| PO:PO:0004507 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 |
| PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 |
| PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 |
| PO:PO:0009052 | PO:PO:0020003 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0025022 | PFscan:PS51369 |
| PANTHER:PTHR31072 | PANTHER:PTHR31072:SF32 | UniProt:Q9LT89 | InterPro:TF_TCP_subgr | InterPro:Transcription_factor_TCP | UniParc:UPI00000AC306 |
| SEG:seg | : | : | : | : | : |
Description
TCP19Transcription factor TCP19 [Source:UniProtKB/Swiss-Prot;Acc:Q9LT89]
Coordinates
chr5:-:21094547..21095702
Molecular Weight (calculated)
31462.3 Da
IEP (calculated)
7.548
GRAVY (calculated)
-0.469
Length
293 amino acids
Sequence
(BLAST)
(BLAST)
001: MESNHEGNAI QVIDQVTTMT HLSDPNPKTK PGMMLMKQED GYLQPVKTKP APKRPTSKDR HTKVEGRGRR IRMPAGCAAR VFQLTRELGH KSDGETIRWL
101: LERAEPAIIE ATGTGTVPAI AVSVNGTLKI PTSSPVLNDG GRDGDGDLIK KRRKRNCTSD FVDVNDSCHS SVTSGLAPIT ASNYGVNILN VNTQGFVPFW
201: PMGMGTAFVT GGPDQMGQMW AIPTVATAPF LNVGARPVSS YVSNASDAEA EMETSGGGTT QPLRDFSLEI YDKRELQFLG GSGNSSPSSC HET
101: LERAEPAIIE ATGTGTVPAI AVSVNGTLKI PTSSPVLNDG GRDGDGDLIK KRRKRNCTSD FVDVNDSCHS SVTSGLAPIT ASNYGVNILN VNTQGFVPFW
201: PMGMGTAFVT GGPDQMGQMW AIPTVATAPF LNVGARPVSS YVSNASDAEA EMETSGGGTT QPLRDFSLEI YDKRELQFLG GSGNSSPSSC HET
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.