Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 1
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY39914 | Canola | nucleus, plastid | 78.8 | 80.2 |
| Bra027886.1-P | Field mustard | nucleus, plastid | 78.55 | 79.95 |
| CDY71135 | Canola | nucleus | 78.05 | 79.85 |
| KRH06094 | Soybean | plastid | 38.4 | 42.66 |
| HORVU5Hr1G035980.1 | Barley | cytosol | 40.4 | 42.52 |
| Os12t0173300-00 | Rice | nucleus | 42.89 | 41.15 |
| TraesCS4B01G093700.1 | Wheat | nucleus, plastid | 37.41 | 39.37 |
| HORVU4Hr1G019380.1 | Barley | nucleus, plastid | 37.66 | 39.32 |
| Zm00001d023565_P001 | Maize | nucleus | 39.65 | 39.26 |
| TraesCS4A01G222700.1 | Wheat | nucleus, plastid | 37.66 | 39.22 |
| TraesCS4D01G090500.1 | Wheat | nucleus, plastid | 37.66 | 39.22 |
| Zm00001d041866_P001 | Maize | nucleus | 40.15 | 38.7 |
| TraesCS5A01G121800.1 | Wheat | nucleus | 40.4 | 38.66 |
| Zm00001d053020_P001 | Maize | cytosol, nucleus, plastid | 36.91 | 38.24 |
| AT1G35560.1 | Thale cress | nucleus, plastid | 32.42 | 38.12 |
| TraesCS5B01G117100.1 | Wheat | nucleus | 39.15 | 37.65 |
| AT5G23280.1 | Thale cress | nucleus | 23.19 | 37.2 |
| Os11t0175700-00 | Rice | nucleus, plastid | 37.16 | 36.7 |
| AT5G08330.1 | Thale cress | nucleus | 21.45 | 35.98 |
| VIT_12s0035g00690.t01 | Wine grape | nucleus, plastid | 40.9 | 35.65 |
| AT1G69690.1 | Thale cress | nucleus, plastid | 26.93 | 33.23 |
| AT2G37000.1 | Thale cress | nucleus, plastid | 15.46 | 32.98 |
| Zm00001d004791_P001 | Maize | mitochondrion, nucleus | 16.21 | 31.71 |
| AT3G45150.1 | Thale cress | nucleus | 12.22 | 29.7 |
| AT5G51910.1 | Thale cress | nucleus | 19.95 | 27.3 |
| AT3G27010.1 | Thale cress | nucleus | 21.2 | 27.07 |
| GSMUA_Achr6P17840_001 | Banana | cytosol | 25.44 | 26.29 |
| AT5G41030.1 | Thale cress | nucleus | 15.21 | 25.1 |
| AT1G72010.1 | Thale cress | nucleus, plastid | 23.19 | 24.8 |
| GSMUA_Achr10P... | Banana | nucleus | 24.94 | 24.75 |
| AT3G47620.1 | Thale cress | nucleus | 28.68 | 23.52 |
| AT2G45680.1 | Thale cress | cytosol | 19.7 | 22.19 |
Protein Annotations
| MapMan:15.5.19 | EntrezGene:842177 | ProteinID:AAG50694.1 | ProteinID:AAG50759.1 | ProteinID:AEE33497.1 | ProteinID:AEE33498.1 |
| ArrayExpress:AT1G58100 | EnsemblPlantsGene:AT1G58100 | RefSeq:AT1G58100 | TAIR:AT1G58100 | RefSeq:AT1G58100-TAIR-G | EnsemblPlants:AT1G58100.1 |
| TAIR:AT1G58100.1 | EMBL:AY081344 | EMBL:BT008493 | ncoils:Coil | GO:GO:0000978 | GO:GO:0001047 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0044212 |
| InterPro:IPR017887 | RefSeq:NP_001077739.1 | RefSeq:NP_176107.1 | PFAM:PF03634 | PO:PO:0000013 | PO:PO:0000037 |
| PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 |
| PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 |
| PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 |
| PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 |
| PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 |
| PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PFscan:PS51369 | PANTHER:PTHR31072 |
| PANTHER:PTHR31072:SF64 | UniProt:Q9C518 | InterPro:TF_TCP_subgr | InterPro:Transcription_factor_TCP | UniParc:UPI00000A2919 | SEG:seg |
Description
TCP8Transcription factor TCP8 [Source:UniProtKB/Swiss-Prot;Acc:Q9C518]
Coordinates
chr1:-:21512332..21514189
Molecular Weight (calculated)
42473.7 Da
IEP (calculated)
6.450
GRAVY (calculated)
-0.716
Length
401 amino acids
Sequence
(BLAST)
(BLAST)
001: MDLSDIRNNN NDTAAVATGG GARQLVDASL SIVPRSTPPE DSTLATTSST ATATTTKRST KDRHTKVDGR GRRIRMPALC AARVFQLTRE LGHKSDGETI
101: EWLLQQAEPA IVAATGTGTI PANFSTLSVS LRSSGSTLSA PPSKSVPLYG ALGLTHHQYD EQGGGGVFAA HTSPLLGFHH QLQHHQNQNQ NQDPVETIPE
201: GENFSRKRYR SVDLSKENDD RKQNENKSLK ESETSGPTAA PMWAVAPPSR SGAGNTFWML PVPTTAGNQM ESSSNNNTAA GHRAPPMWPF VNSAGGGAGG
301: GGGAATHFMA GTGFSFPMDQ YRGSPLQLGS FLAQPQPTQN LGLSMPDSNL GMLAALNSAY SRGGNANANA EQANNAVEHQ EKQQQSDHDD DSREENSNSS
401: E
101: EWLLQQAEPA IVAATGTGTI PANFSTLSVS LRSSGSTLSA PPSKSVPLYG ALGLTHHQYD EQGGGGVFAA HTSPLLGFHH QLQHHQNQNQ NQDPVETIPE
201: GENFSRKRYR SVDLSKENDD RKQNENKSLK ESETSGPTAA PMWAVAPPSR SGAGNTFWML PVPTTAGNQM ESSSNNNTAA GHRAPPMWPF VNSAGGGAGG
301: GGGAATHFMA GTGFSFPMDQ YRGSPLQLGS FLAQPQPTQN LGLSMPDSNL GMLAALNSAY SRGGNANANA EQANNAVEHQ EKQQQSDHDD DSREENSNSS
401: E
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.