Factsheet for TraesCS4D01G090500.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 4
cytosol 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G175500.1
TraesCS2B01G201800.1
TraesCS2D01G182800.1
TraesCS4A01G222700.1	nucleus
TraesCS4B01G093700.1	nucleus
TraesCS4D01G090500.1	nucleus
TraesCS5A01G121800.1	nucleus
TraesCS5B01G117100.1	nucleus

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G58100.1	TraesCS4A01G222700.1	AT1G58100.1	23760157
AT1G58100.1	TraesCS4B01G093700.1	AT1G58100.1	23760157
AT1G58100.1	TraesCS4D01G090500.1	AT1G58100.1	23760157
AT1G58100.1	TraesCS5A01G121800.1	AT1G58100.1	23760157
AT1G58100.1	TraesCS5B01G117100.1	AT1G58100.1	23760157
AT1G58100.1	TraesCS4A01G222700.1	AT1G58100.1	23760157
AT1G58100.1	TraesCS4B01G093700.1	AT1G58100.1	23760157
AT1G58100.1	TraesCS4D01G090500.1	AT1G58100.1	23760157
AT1G58100.1	TraesCS5A01G121800.1	AT1G58100.1	23760157
AT1G58100.1	TraesCS5B01G117100.1	AT1G58100.1	23760157
AT1G58100.1	TraesCS2A01G175500.1	AT5G60960.1	21297037
AT1G58100.1	TraesCS2B01G201800.1	AT5G60960.1	21297037
AT1G58100.1	TraesCS2D01G182800.1	AT5G60960.1	21297037

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G222700.1	Wheat	nucleus, plastid	99.22	99.22
TraesCS4B01G093700.1	Wheat	nucleus, plastid	97.14	98.16
HORVU4Hr1G019380.1	Barley	nucleus, plastid	94.03	94.27
Os11t0175700-00	Rice	nucleus, plastid	68.83	65.27
Zm00001d053020_P001	Maize	cytosol, nucleus, plastid	60.78	60.47
TraesCS2D01G049400.1	Wheat	cytosol	9.87	43.18
KRH06094	Soybean	plastid	36.1	38.5
TraesCS6D01G216100.1	Wheat	plastid	20.52	38.35
CDY39914	Canola	nucleus, plastid	39.22	38.32
Bra027886.1-P	Field mustard	nucleus, plastid	38.96	38.07
TraesCS2D01G372200.1	Wheat	plastid	20.26	38.05
CDY71135	Canola	nucleus	38.44	37.76
AT1G58100.1	Thale cress	nucleus	39.22	37.66
TraesCS6D01G397000.1	Wheat	mitochondrion	18.44	36.04
VIT_12s0035g00690.t01	Wine grape	nucleus, plastid	37.4	31.3
Solyc01g103780.2.1	Tomato	nucleus	34.29	29.66
PGSC0003DMT400064164	Potato	nucleus	38.96	28.09
GSMUA_Achr6P17840_001	Banana	cytosol	27.79	27.58
GSMUA_Achr10P...	Banana	nucleus	28.83	27.48
TraesCS6D01G285600.1	Wheat	nucleus	27.27	26.18
TraesCS5D01G516300.1	Wheat	nucleus	22.6	25.29
TraesCS7D01G187600.1	Wheat	cytosol	25.71	24.75
TraesCS5D01G316300.1	Wheat	nucleus	20.52	23.65
TraesCS3D01G428700.1	Wheat	nucleus	20.52	23.51

Protein Annotations

EnsemblPlants:TraesCS4D01G090500.1	EnsemblPlantsGene:TraesCS4D01G090500	GO:GO:0000978	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0044212	InterPro:IPR017887	InterPro:TF_TCP_subgr	InterPro:Transcription_factor_TCP	PANTHER:PTHR31072
PANTHER:PTHR31072:SF36	PFAM:PF03634	PFscan:PS51369	SEG:seg	MapMan:15.5.19	:

Description

No Description!

Coordinates

chr4D:-:65576834..65578216

Molecular Weight (calculated)

40628.9 Da

IEP (calculated)

7.535

GRAVY (calculated)

-0.809

Length

385 amino acids

Sequence
(BLAST)

001: MDQQGAAPSS STSTSTNSSR STSDHPHHAS AAAHHHPFYY AAPAATGATP PPPFMGSLAM VPAATPAGAQ TANHSQSITV AEPPSEKKVA KRPTKDRHTK
101: VDGRGRRIRM PALCAARVFQ LTRELGHKTD GETVEWLLQQ AEPAIVAATG TGTVPANFST LAASLRPGAS SRAAPFQHHL QHQPQHDVAA MLGFHGHHQH
201: QLLPPPPQQQ HHHQHPEAPQ DPGAGEFMRK RYREADDLFK DTGRHQDPEG GGEPAQKPRP APPPTAVSGA MWAVAPNSGA GGGGGAFWMQ PAWAFGAGNT
301: VQAPLQFISR SSFPGGMGDT NLGMLAGLNS CGRSTGGEQQ QHQHQQQPQQ EEEEGQPPEM DQHRRGSNSA GANGHEAGHS AASPQ

Best Arabidopsis Sequence Match ( AT1G35560.1 )
(BLAST)

001: MESHNNNQSN NNTTGSAHLV PSMGPISGSV SLTTTAPNST TTTVTAAKTP AKRPSKDRHI KVDGRGRRIR MPAICAARVF QLTRELQHKS DGETIEWLLQ
101: QAEPAIIAAT GTGTIPANIS TLNISLRSSG STLSAPLSKS FHMGRAAQNA AVFGFQQQLY HPHHITTDSS SSSLPKTFRE EDLFKDPNFL DQEPGSRSPK
201: PGSEAPDQDP GSTRSRTQNM IPPMWALAPT PASTNGGSAF WMLPVGGGGG PANVQDPSQH MWAFNPGHYP GRIGSVQLGS MLVGGQQLGL GVAENNNLGL
301: FSGGGGDGGR VGLGMSLEQK PQHQVSDHAT RDQNPTIDGS P

Arabidopsis Description

TCP23Transcription factor TCP23 [Source:UniProtKB/Swiss-Prot;Acc:Q9LQF0]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.