Factsheet for GSMUA_Achr10P09730_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...	nucleus
GSMUA_Achr2P06230_001
GSMUA_Achr6P17840_001	nucleus

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G58100.1	GSMUA_Achr10P...	AT1G58100.1	23760157
AT1G58100.1	GSMUA_Achr6P17840_001	AT1G58100.1	23760157
AT1G58100.1	GSMUA_Achr10P...	AT1G58100.1	23760157
AT1G58100.1	GSMUA_Achr6P17840_001	AT1G58100.1	23760157
AT1G58100.1	GSMUA_Achr2P06230_001	AT5G60960.1	21297037

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P17840_001	Banana	cytosol	36.14	37.63
Zm00001d004791_P001	Maize	mitochondrion, nucleus	17.33	34.15
AT1G35560.1	Thale cress	nucleus, plastid	25.74	30.5
GSMUA_Achr6P02720_001	Banana	nucleus	20.05	30.0
GSMUA_Achr4P00500_001	Banana	nucleus	19.8	29.41
TraesCS4B01G093700.1	Wheat	nucleus, plastid	27.48	29.13
TraesCS4A01G222700.1	Wheat	nucleus, plastid	27.48	28.83
TraesCS4D01G090500.1	Wheat	nucleus, plastid	27.48	28.83
GSMUA_Achr7P20990_001	Banana	nucleus	19.06	28.73
HORVU4Hr1G019380.1	Barley	nucleus, plastid	27.23	28.65
Solyc06g065190.1.1	Tomato	nucleus	22.52	28.0
KRH06094	Soybean	plastid	25.0	27.98
PGSC0003DMT400067150	Potato	nucleus, plastid	22.52	27.83
Zm00001d053020_P001	Maize	cytosol, nucleus, plastid	26.49	27.65
PGSC0003DMT400023981	Potato	nucleus	26.49	27.51
Os11t0175700-00	Rice	nucleus, plastid	27.48	27.34
Solyc11g020670.1.1	Tomato	nucleus	25.25	27.27
Os12t0173300-00	Rice	nucleus	27.97	27.03
VIT_18s0117g00340.t01	Wine grape	nucleus	23.51	26.76
Solyc01g103780.2.1	Tomato	nucleus	29.21	26.52
Zm00001d023565_P001	Maize	nucleus	26.49	26.42
CDY71135	Canola	nucleus	25.25	26.02
TraesCS5A01G121800.1	Wheat	nucleus	26.98	26.01
HORVU5Hr1G035980.1	Barley	cytosol	24.5	25.98
TraesCS5B01G117100.1	Wheat	nucleus	26.49	25.66
GSMUA_Achr11P...	Banana	cytosol, nucleus, plastid	15.35	25.41
Bra027886.1-P	Field mustard	nucleus, plastid	24.75	25.38
CDY39914	Canola	nucleus, plastid	24.75	25.38
AT1G58100.1	Thale cress	nucleus	24.75	24.94
VIT_12s0035g00690.t01	Wine grape	nucleus, plastid	28.22	24.78
KRH26343	Soybean	nucleus, plastid	26.49	24.65
Zm00001d041866_P001	Maize	nucleus	25.0	24.28
PGSC0003DMT400064164	Potato	nucleus	30.45	23.03
GSMUA_Achr7P17990_001	Banana	nucleus	19.06	22.92
CDX72856	Canola	nucleus	18.81	22.75
CDX96370	Canola	nucleus	18.81	22.69
GSMUA_AchrUn_...	Banana	nucleus	12.38	22.03
Bra016090.1-P	Field mustard	nucleus	19.31	21.91
GSMUA_Achr11P...	Banana	cytosol, peroxisome, plastid	17.08	21.7
GSMUA_Achr4P27220_001	Banana	nucleus	11.63	21.36
GSMUA_Achr10P...	Banana	nucleus	12.38	21.28
CDX82193	Canola	nucleus, plastid	18.32	21.02
GSMUA_Achr11P...	Banana	nucleus	12.87	20.88
CDY03666	Canola	nucleus, plastid	18.32	20.85
GSMUA_Achr6P36470_001	Banana	nucleus	19.55	20.79
GSMUA_Achr1P27500_001	Banana	nucleus	14.6	20.42
GSMUA_Achr8P00050_001	Banana	cytoskeleton, cytosol, peroxisome	17.33	20.41
GSMUA_Achr11P...	Banana	nucleus	11.39	20.35
AT1G72010.1	Thale cress	nucleus, plastid	18.56	20.0
Bra008001.1-P	Field mustard	nucleus, plastid	18.32	19.79
GSMUA_Achr7P02680_001	Banana	nucleus	14.36	19.73
GSMUA_Achr7P23010_001	Banana	nucleus	14.6	19.47
GSMUA_Achr3P12320_001	Banana	cytosol	9.65	19.31
GSMUA_Achr11P...	Banana	nucleus	13.61	19.16
GSMUA_Achr5P25030_001	Banana	nucleus	13.61	19.16
GSMUA_Achr5P03320_001	Banana	cytosol	8.91	19.05
GSMUA_AchrUn_...	Banana	cytosol, extracellular, nucleus	7.67	14.62
GSMUA_Achr2P10690_001	Banana	cytosol, mitochondrion, nucleus, plastid	7.43	14.22
GSMUA_Achr6P07930_001	Banana	cytosol	6.68	11.39

Protein Annotations

EnsemblPlants:GSMUA_Achr10P09730_001	EnsemblPlants:GSMUA_Achr10T09730_001	EnsemblPlantsGene:GSMUA_Achr10G09730_001	InterPro:Transcription_factor_TCP	PANTHER:PTHR31072	PANTHER:PTHR31072:SF64
PFAM:PF03634	SEG:seg	UniParc:UPI000295841D	UniProt:M0RGU9	MapMan:35.2	:

Description

Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr10G09730_001]

Coordinates

chr10:-:19405792..19407284

Molecular Weight (calculated)

40673.2 Da

IEP (calculated)

11.128

GRAVY (calculated)

-0.505

Length

404 amino acids

Sequence
(BLAST)

001: MEQSELSRHG GQGGGGAGTG GGGGGGGRGG RVRANSNSSS GTSSSRSTSE HHQPQHHFGH HHHQQQKQQG NSSIPSSLEL VPLKNRAGPS SVAPFMGSIV
101: HHGVVDASLA ISTAKPDPSL SPGAVGPSSS SAAADTSKKL AGGGAPAKRS SKDRHTKVDG RGRRIRMPAI CAARQAEPAI IATTGTGTIP ANFSTLNISL
201: RSSGSSLSAP PSKSAPLSFH ALALAHHRPD FEQVTDPGMS HAAAMLGLQG GGSSGGGDSA DTYLRKRFRE DLFKDEQPEG SGGAGPSSPS SASKSMRAGS
301: GLQLHQRSQQ QEAAAAAAAA GGAFWMLPVS TGSAAPAVAA ATGPSEPSIW TFPAMAGQYR PGISGGSSIQ APLQFMSRIN LSGASRTGNV GNQSRDARGP
401: QCIQ

Best Arabidopsis Sequence Match ( AT1G58100.2 )
(BLAST)

001: MDLSDIRNNN NDTAAVATGG GARQLVDASL SIVPRSTPPE DSTLATTSST ATATTTKRST KDRHTKVDGR GRRIRMPALC AARVFQLTRE LGTGTIPANF
101: STLSVSLRSS GSTLSAPPSK SVPLYGALGL THHQYDEQGG GGVFAAHTSP LLGFHHQLQH HQNQNQNQDP VETIPEGENF SRKRYRSVDL SKENDDRKQN
201: ENKSLKESET SGPTAAPMWA VAPPSRSGAG NTFWMLPVPT TAGNQMESSS NNNTAAGHRA PPMWPFVNSA GGGAGGGGGA ATHFMAGTGF SFPMDQYRGS
301: PLQLGSFLAQ PQPTQNLGLS MPDSNLGMLA ALNSAYSRGG NANANAEQAN NAVEHQEKQQ QSDHDDDSRE ENSNSSE

Arabidopsis Description

TCP8Transcription factor TCP8 [Source:UniProtKB/Swiss-Prot;Acc:Q9C518]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.