Factsheet for GSMUA_Achr1P27500_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_AchrUn_...	Banana	cytosol, extracellular, nucleus	50.52	68.87
GSMUA_Achr7P02680_001	Banana	nucleus	65.05	63.95
GSMUA_Achr11P...	Banana	nucleus	61.94	62.37
GSMUA_Achr5P25030_001	Banana	nucleus	58.48	58.88
GSMUA_AchrUn_...	Banana	nucleus	46.02	58.59
GSMUA_Achr7P23010_001	Banana	nucleus	59.17	56.44
GSMUA_Achr11P...	Banana	nucleus	46.37	53.82
GSMUA_Achr10P...	Banana	nucleus	38.06	46.81
Zm00001d011985_P001	Maize	nucleus	44.98	41.27
EES01992	Sorghum	nucleus	45.33	40.31
Zm00001d042305_P001	Maize	cytosol, mitochondrion, nucleus	44.98	40.12
Os01t0924400-01	Rice	nucleus	43.94	40.06
TraesCS3D01G428700.1	Wheat	nucleus	41.18	35.42
TraesCS3A01G436100.1	Wheat	nucleus, plastid	41.52	35.19
TraesCS3B01G470700.1	Wheat	nucleus	41.87	34.67
GSMUA_Achr4P00500_001	Banana	nucleus	32.53	34.56
GSMUA_Achr6P07930_001	Banana	cytosol	28.03	34.18
GSMUA_Achr6P02720_001	Banana	nucleus	31.83	34.07
GSMUA_Achr7P20990_001	Banana	nucleus	31.49	33.96
GSMUA_Achr11P...	Banana	cytosol, nucleus, plastid	26.99	31.97
GSMUA_Achr3P12320_001	Banana	cytosol	21.11	30.2
GSMUA_Achr5P03320_001	Banana	cytosol	16.95	25.93
GSMUA_Achr7P17990_001	Banana	nucleus	29.76	25.6
HORVU3Hr1G095400.2	Barley	golgi, plasma membrane	40.83	25.38
GSMUA_Achr11P...	Banana	cytosol, peroxisome, plastid	25.95	23.58
GSMUA_Achr11P...	Banana	nucleus	18.34	23.45
GSMUA_Achr4P27220_001	Banana	nucleus	17.65	23.18
GSMUA_Achr2P10690_001	Banana	cytosol, mitochondrion, nucleus, plastid	16.61	22.75
GSMUA_Achr6P36470_001	Banana	nucleus	28.03	21.32
GSMUA_Achr8P00050_001	Banana	cytoskeleton, cytosol, peroxisome	24.57	20.7
GSMUA_Achr6P17840_001	Banana	cytosol	22.84	17.01
GSMUA_Achr10P...	Banana	nucleus	20.42	14.6

Protein Annotations

MapMan:15.5.19	MapMan:27.1.5.2	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSMUA_Achr1G27500_001
EnsemblPlants:GSMUA_Achr1P27500_001	EnsemblPlants:GSMUA_Achr1T27500_001	InterPro:IPR017887	UniProt:M0S3K7	PFAM:PF03634	PFscan:PS51369
PANTHER:PTHR31072	PANTHER:PTHR31072:SF4	InterPro:TF_TCP_subgr	InterPro:Transcription_factor_TCP	UniParc:UPI0002961FB1	SEG:seg

Description

Putative Transcription factor TCP20 [Source:GMGC_GENE;Acc:GSMUA_Achr1G27500_001]

Coordinates

chr1:+:24286207..24287187

Molecular Weight (calculated)

30395.0 Da

IEP (calculated)

8.773

GRAVY (calculated)

-0.445

Length

289 amino acids

Sequence
(BLAST)

001: MDLKGSAKLP QEVPKFHRAL GLPQSDKREP TTASSAAESC DLSPSTTSGG RELKAVATAA AAEKDEQRRQ LAPKRSSNKD RHTKVDGRGR RIRMPALCAA
101: RVFQLTRELG HKSDGETIQW LLQQAEPAII AATGTGTIPA SALAAAGSVP NPGPTVLAGV HQKPDEAGQG AIAALRPNWA MVGAAGLPRS HLGFFIHRMA
201: LHGMELPSAN LGAMSFASMF GGHGQQLPGL ELGLSQDAHI GVLNSQALSQ FYQQMTPGRL GAGADGSGRL QQPQQQSHLA EDDSQESQD

Best Arabidopsis Sequence Match ( AT3G27010.1 )
(BLAST)

001: MDPKNLNRHQ VPNFLNPPPP PRNQGLVDDD AASAVVSDEN RKPTTEIKDF QIVVSASDKE PNKKSQNQNQ LGPKRSSNKD RHTKVEGRGR RIRMPALCAA
101: RIFQLTRELG HKSDGETIQW LLQQAEPSII AATGSGTIPA SALASSAATS NHHQGGSLTA GLMISHDLDG GSSSSGRPLN WGIGGGEGVS RSSLPTGLWP
201: NVAGFGSGVP TTGLMSEGAG YRIGFPGFDF PGVGHMSFAS ILGGNHNQMP GLELGLSQEG NVGVLNPQSF TQIYQQMGQA QAQAQGRVLH HMHHNHEEHQ
301: QESGEKDDSQ GSGR

Arabidopsis Description

TCP20TCP20 [Source:UniProtKB/TrEMBL;Acc:A0A178VAT1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.