Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
- plastid 1
Predictors | GFP | MS/MS | Papers |
---|---|---|---|
PPI
Inferred distinct locusB in Crop
locusB | locations |
---|---|
GSMUA_Achr10P... | nucleus |
GSMUA_Achr2P06230_001 | |
GSMUA_Achr6P17840_001 | nucleus |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
GSMUA_Achr10P... | Banana | nucleus | 37.63 | 36.14 |
Zm00001d004791_P001 | Maize | mitochondrion, nucleus | 19.07 | 36.1 |
GSMUA_Achr3P12320_001 | Banana | cytosol | 17.53 | 33.66 |
KRH06094 | Soybean | plastid | 31.19 | 33.52 |
GSMUA_Achr5P03320_001 | Banana | cytosol | 15.46 | 31.75 |
GSMUA_Achr6P02720_001 | Banana | nucleus | 21.39 | 30.74 |
AT1G35560.1 | Thale cress | nucleus, plastid | 26.55 | 30.21 |
Solyc06g065190.1.1 | Tomato | nucleus | 25.0 | 29.85 |
GSMUA_AchrUn_... | Banana | cytosol, extracellular, nucleus | 16.24 | 29.72 |
PGSC0003DMT400067150 | Potato | nucleus, plastid | 25.0 | 29.66 |
GSMUA_Achr11P... | Banana | cytosol, nucleus, plastid | 18.56 | 29.51 |
VIT_12s0035g00690.t01 | Wine grape | nucleus, plastid | 34.79 | 29.35 |
GSMUA_Achr4P27220_001 | Banana | nucleus | 16.49 | 29.09 |
GSMUA_Achr4P00500_001 | Banana | nucleus | 20.36 | 29.04 |
GSMUA_Achr11P... | Banana | nucleus | 16.75 | 28.76 |
HORVU5Hr1G035980.1 | Barley | cytosol | 28.09 | 28.61 |
TraesCS4B01G093700.1 | Wheat | nucleus, plastid | 27.84 | 28.35 |
HORVU4Hr1G019380.1 | Barley | nucleus, plastid | 27.84 | 28.12 |
GSMUA_Achr7P20990_001 | Banana | nucleus | 19.33 | 27.99 |
GSMUA_Achr2P10690_001 | Banana | cytosol, mitochondrion, nucleus, plastid | 15.21 | 27.96 |
VIT_18s0117g00340.t01 | Wine grape | nucleus | 25.52 | 27.89 |
TraesCS4D01G090500.1 | Wheat | nucleus, plastid | 27.58 | 27.79 |
TraesCS4A01G222700.1 | Wheat | nucleus, plastid | 27.58 | 27.79 |
Os12t0173300-00 | Rice | nucleus | 29.64 | 27.51 |
KRH26343 | Soybean | nucleus, plastid | 30.67 | 27.42 |
Zm00001d053020_P001 | Maize | cytosol, nucleus, plastid | 27.06 | 27.13 |
Solyc11g020670.1.1 | Tomato | nucleus | 26.03 | 27.01 |
Os11t0175700-00 | Rice | nucleus, plastid | 27.84 | 26.6 |
TraesCS5A01G121800.1 | Wheat | nucleus | 28.35 | 26.25 |
Zm00001d023565_P001 | Maize | nucleus | 27.32 | 26.17 |
CDY71135 | Canola | nucleus | 26.29 | 26.02 |
PGSC0003DMT400023981 | Potato | nucleus | 26.03 | 25.96 |
Zm00001d041866_P001 | Maize | nucleus | 27.84 | 25.96 |
Bra027886.1-P | Field mustard | nucleus, plastid | 26.29 | 25.89 |
CDY39914 | Canola | nucleus, plastid | 26.29 | 25.89 |
TraesCS5B01G117100.1 | Wheat | nucleus | 27.58 | 25.66 |
AT1G58100.1 | Thale cress | nucleus | 26.29 | 25.44 |
GSMUA_Achr10P... | Banana | nucleus | 14.95 | 24.68 |
GSMUA_Achr6P07930_001 | Banana | cytosol | 14.95 | 24.47 |
CDX72856 | Canola | nucleus | 20.62 | 23.95 |
CDX96370 | Canola | nucleus | 20.36 | 23.58 |
GSMUA_Achr7P17990_001 | Banana | nucleus | 20.1 | 23.21 |
Solyc01g103780.2.1 | Tomato | nucleus | 26.55 | 23.15 |
Bra016090.1-P | Field mustard | nucleus | 21.13 | 23.03 |
GSMUA_AchrUn_... | Banana | nucleus | 13.4 | 22.91 |
GSMUA_Achr1P27500_001 | Banana | nucleus | 17.01 | 22.84 |
CDX82193 | Canola | nucleus, plastid | 20.62 | 22.73 |
PGSC0003DMT400064164 | Potato | nucleus | 31.19 | 22.66 |
CDY03666 | Canola | nucleus, plastid | 20.62 | 22.54 |
Bra008001.1-P | Field mustard | nucleus, plastid | 21.39 | 22.19 |
GSMUA_Achr11P... | Banana | nucleus | 14.18 | 22.09 |
AT1G72010.1 | Thale cress | nucleus, plastid | 20.88 | 21.6 |
GSMUA_Achr11P... | Banana | cytosol, peroxisome, plastid | 17.27 | 21.07 |
GSMUA_Achr6P36470_001 | Banana | nucleus | 20.62 | 21.05 |
GSMUA_Achr11P... | Banana | nucleus | 14.95 | 20.21 |
GSMUA_Achr7P23010_001 | Banana | nucleus | 15.46 | 19.8 |
GSMUA_Achr7P02680_001 | Banana | nucleus | 14.69 | 19.39 |
GSMUA_Achr5P25030_001 | Banana | nucleus | 14.18 | 19.16 |
GSMUA_Achr8P00050_001 | Banana | cytoskeleton, cytosol, peroxisome | 15.98 | 18.08 |
Protein Annotations
MapMan:15.5.19 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 |
GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSMUA_Achr6G17840_001 | EnsemblPlants:GSMUA_Achr6P17840_001 |
EnsemblPlants:GSMUA_Achr6T17840_001 | InterPro:IPR017887 | UniProt:M0T7Y2 | PFAM:PF03634 | PFscan:PS51369 | PANTHER:PTHR31072 |
PANTHER:PTHR31072:SF36 | InterPro:TF_TCP_subgr | InterPro:Transcription_factor_TCP | UniParc:UPI00029650FA | SEG:seg | : |
Description
Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr6G17840_001]
Coordinates
chr6:+:12018070..12020574
Molecular Weight (calculated)
42047.7 Da
IEP (calculated)
7.455
GRAVY (calculated)
-0.322
Length
388 amino acids
Sequence
(BLAST)
(BLAST)
001: MPAICAARVF QLTRELGHKT DGETIEWLLQ QAEPAIIAAT GTGTIPANFS TLNISLRSSG SSFSAPASKS APLSFHALAL AHHRPDFELH QLLSADQIGE
101: GLQGGVGSGG GDSTDTYLRK RFRGDLFKDE QQTPPQHQEG GGGAGPSPPG ILPAAAMWAV APNSAAGGAF WMLPMSAGSA APAVAAATGT IQAPLQFMSR
201: QPTSGVAAQH LGLGTSETNL GMLAALNAYN RGGGLSMNSE HHHPMDHHHQ AHTHQQQQSA DSDEDNHTMF FQLVKEYFHR FSFFYFCSIL LECCDFKNLI
301: CGSKWAARVG NKDLYRDPIR LCSIILCLFE REREREREEE RGQYTVCRCS PIKAISGRTF LIRIVRGRTR GEGPCSSDPS HHVVSARR
101: GLQGGVGSGG GDSTDTYLRK RFRGDLFKDE QQTPPQHQEG GGGAGPSPPG ILPAAAMWAV APNSAAGGAF WMLPMSAGSA APAVAAATGT IQAPLQFMSR
201: QPTSGVAAQH LGLGTSETNL GMLAALNAYN RGGGLSMNSE HHHPMDHHHQ AHTHQQQQSA DSDEDNHTMF FQLVKEYFHR FSFFYFCSIL LECCDFKNLI
301: CGSKWAARVG NKDLYRDPIR LCSIILCLFE REREREREEE RGQYTVCRCS PIKAISGRTF LIRIVRGRTR GEGPCSSDPS HHVVSARR
001: MDLSDIRNNN NDTAAVATGG GARQLVDASL SIVPRSTPPE DSTLATTSST ATATTTKRST KDRHTKVDGR GRRIRMPALC AARVFQLTRE LGHKSDGETI
101: EWLLQQAEPA IVAATGTGTI PANFSTLSVS LRSSGSTLSA PPSKSVPLYG ALGLTHHQYD EQGGGGVFAA HTSPLLGFHH QLQHHQNQNQ NQDPVETIPE
201: GENFSRKRYR SVDLSKENDD RKQNENKSLK ESETSGPTAA PMWAVAPPSR SGAGNTFWML PVPTTAGNQM ESSSNNNTAA GHRAPPMWPF VNSAGGGAGG
301: GGGAATHFMA GTGFSFPMDQ YRGSPLQLGS FLAQPQPTQN LGLSMPDSNL GMLAALNSAY SRGGNANANA EQANNAVEHQ EKQQQSDHDD DSREENSNSS
401: E
101: EWLLQQAEPA IVAATGTGTI PANFSTLSVS LRSSGSTLSA PPSKSVPLYG ALGLTHHQYD EQGGGGVFAA HTSPLLGFHH QLQHHQNQNQ NQDPVETIPE
201: GENFSRKRYR SVDLSKENDD RKQNENKSLK ESETSGPTAA PMWAVAPPSR SGAGNTFWML PVPTTAGNQM ESSSNNNTAA GHRAPPMWPF VNSAGGGAGG
301: GGGAATHFMA GTGFSFPMDQ YRGSPLQLGS FLAQPQPTQN LGLSMPDSNL GMLAALNSAY SRGGNANANA EQANNAVEHQ EKQQQSDHDD DSREENSNSS
401: E
Arabidopsis Description
TCP8Transcription factor TCP8 [Source:UniProtKB/Swiss-Prot;Acc:Q9C518]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.