Factsheet for HORVU5Hr1G035980.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
MultiLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU2Hr1G032910.2
HORVU4Hr1G019380.1	nucleus
HORVU5Hr1G035980.1	nucleus

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G58100.1	HORVU4Hr1G019380.1	AT1G58100.1	23760157
AT1G58100.1	HORVU5Hr1G035980.1	AT1G58100.1	23760157
AT1G58100.1	HORVU4Hr1G019380.1	AT1G58100.1	23760157
AT1G58100.1	HORVU5Hr1G035980.1	AT1G58100.1	23760157
AT1G58100.1	HORVU2Hr1G032910.2	AT5G60960.1	21297037

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G121800.1	Wheat	nucleus	95.01	86.4
TraesCS5B01G117100.1	Wheat	nucleus	92.91	84.89
Os12t0173300-00	Rice	nucleus	71.13	64.83
Zm00001d023565_P001	Maize	nucleus	66.4	62.47
Zm00001d041866_P001	Maize	nucleus	64.83	59.38
HORVU4Hr1G019380.1	Barley	nucleus, plastid	48.29	47.92
CDY71135	Canola	nucleus	43.04	41.84
CDY39914	Canola	nucleus, plastid	42.26	40.86
Bra027886.1-P	Field mustard	nucleus, plastid	41.99	40.61
KRH06094	Soybean	plastid	38.32	40.44
AT1G58100.1	Thale cress	nucleus	42.52	40.4
HORVU2Hr1G090640.1	Barley	plastid	19.42	36.63
VIT_12s0035g00690.t01	Wine grape	nucleus, plastid	42.26	35.0
HORVU6Hr1G093960.1	Barley	cytosol, peroxisome	22.83	32.58
HORVU6Hr1G059930.1	Barley	plastid	19.42	32.03
PGSC0003DMT400064164	Potato	nucleus	43.04	30.71
Solyc01g103780.2.1	Tomato	nucleus	35.43	30.34
HORVU7Hr1G038130.1	Barley	nucleus	30.45	29.0
HORVU6Hr1G075650.1	Barley	nucleus	30.18	28.61
GSMUA_Achr6P17840_001	Banana	cytosol	28.61	28.09
GSMUA_Achr10P...	Banana	nucleus	25.98	24.5
HORVU5Hr1G080210.1	Barley	cytosol	17.32	24.18
HORVU5Hr1G117990.1	Barley	cytosol, mitochondrion, nucleus	21.26	21.6
HORVU3Hr1G095400.2	Barley	golgi, plasma membrane	22.57	18.49

Protein Annotations

MapMan:15.5.19	UniProt:A0A287QV64	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:HORVU5Hr1G035980
EnsemblPlants:HORVU5Hr1G035980.1	InterPro:IPR017887	PFAM:PF03634	PFscan:PS51369	PANTHER:PTHR31072	PANTHER:PTHR31072:SF36
InterPro:TF_TCP_subgr	InterPro:Transcription_factor_TCP	UniParc:UPI000B468FC5	SEG:seg	:	:

Description

No Description!

Coordinates

chrchr5H:+:253350552..253352280

Molecular Weight (calculated)

40170.2 Da

IEP (calculated)

5.806

GRAVY (calculated)

-0.812

Length

381 amino acids

Sequence
(BLAST)

001: AGGTSGSRGG GGDHHPHHPF YYAGPAEPNN VQQQPQPQQF IGSLAITPVV TDQAPASSAE KKAVAPVTPS AGTLAKRPSK DRHTKVDGRG RRIRMPALCA
101: ARVFQLTREL GHKSDGETIE WLLQQAEPAI LAATGTGTIP ANFSSLNISR AASGTSRPAP FPALALHPHP HHHPQHDMST MLGYHHLLPP PQEPPQDANS
201: PGSFMRKRYR EDLFKEDDER QDPNAPKARE QQAAPPAAMW AVAPNSAAPG GAFWMLPVSA SQAAAARPTE QPMWSFGGGG GGSSTVQAPL QFMSTRVNYP
301: SSVGAMSGMP DTNIGMLAGL NAYDRSGGGG GGTEQQQEHQ QQEMEQQRDG SGGGNEGEEE DGDDDDDSGG EEEGHGNNSS Q

Best Arabidopsis Sequence Match ( AT1G58100.1 )
(BLAST)

001: MDLSDIRNNN NDTAAVATGG GARQLVDASL SIVPRSTPPE DSTLATTSST ATATTTKRST KDRHTKVDGR GRRIRMPALC AARVFQLTRE LGHKSDGETI
101: EWLLQQAEPA IVAATGTGTI PANFSTLSVS LRSSGSTLSA PPSKSVPLYG ALGLTHHQYD EQGGGGVFAA HTSPLLGFHH QLQHHQNQNQ NQDPVETIPE
201: GENFSRKRYR SVDLSKENDD RKQNENKSLK ESETSGPTAA PMWAVAPPSR SGAGNTFWML PVPTTAGNQM ESSSNNNTAA GHRAPPMWPF VNSAGGGAGG
301: GGGAATHFMA GTGFSFPMDQ YRGSPLQLGS FLAQPQPTQN LGLSMPDSNL GMLAALNSAY SRGGNANANA EQANNAVEHQ EKQQQSDHDD DSREENSNSS
401: E

Arabidopsis Description

TCP8Transcription factor TCP8 [Source:UniProtKB/Swiss-Prot;Acc:Q9C518]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.