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Barley
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol, nucleus, mitochondrion

Predictor Summary:
  • cytosol 1
  • mitochondrion 1
  • nucleus 1
PPI

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G51910.1 HORVU3Hr1G022960.5 AT2G03500.1 21798944
AT5G51910.1 HORVU3Hr1G027730.1 AT2G30050.1 21798944
AT5G51910.1 HORVU2Hr1G031050.2 AT3G16980.1 21798944
AT5G51910.1 HORVU2Hr1G031100.1 AT3G16980.1 21798944
AT5G51910.1 HORVU5Hr1G013420.1 AT3G16980.1 21798944
AT5G51910.1 HORVU7Hr1G115000.1 AT3G20420.1 21798944
AT5G51910.1 HORVU7Hr1G115100.2 AT3G20420.1 21798944
AT5G51910.1 HORVU1Hr1G081310.4 AT3G29160.1 21798944
AT5G51910.1 HORVU3Hr1G069190.1 AT3G29160.1 21798944
AT5G51910.1 HORVU2Hr1G013450.3 AT3G47640.1 21798944
AT5G51910.1 HORVU2Hr1G028530.3 AT3G47640.1 21798944
AT5G51910.1 AGP50789 AT4G11175.1 21798944
AT5G51910.1 HORVU0Hr1G024630.1 AT4G11175.1 21798944
AT5G51910.1 HORVU0Hr1G025190.1 AT4G11175.1 21798944
AT5G51910.1 HORVU0Hr1G026200.1 AT4G11175.1 21798944
AT5G51910.1 HORVU0Hr1G026270.1 AT4G11175.1 21798944
AT5G51910.1 HORVU0Hr1G026810.1 AT4G11175.1 21798944
AT5G51910.1 HORVU0Hr1G028370.1 AT4G11175.1 21798944
AT5G51910.1 HORVU0Hr1G032930.1 AT4G11175.1 21798944
AT5G51910.1 HORVU0Hr1G033440.1 AT4G11175.1 21798944
AT5G51910.1 HORVU0Hr1G033710.1 AT4G11175.1 21798944
AT5G51910.1 HORVU0Hr1G034480.1 AT4G11175.1 21798944
AT5G51910.1 HORVU0Hr1G035290.1 AT4G11175.1 21798944
AT5G51910.1 HORVU0Hr1G036980.1 AT4G11175.1 21798944
AT5G51910.1 HORVU0Hr1G037370.1 AT4G11175.1 21798944
AT5G51910.1 HORVU0Hr1G037630.1 AT4G11175.1 21798944
AT5G51910.1 HORVU0Hr1G037950.1 AT4G11175.1 21798944
AT5G51910.1 HORVU3Hr1G110940.1 AT4G11175.1 21798944
AT5G51910.1 HORVU5Hr1G064730.1 AT4G11175.1 21798944
AT5G51910.1 HORVU5Hr1G070820.1 AT4G11175.1 21798944
AT5G51910.1 HORVU6Hr1G037250.1 AT4G11175.1 21798944
AT5G51910.1 HORVU7Hr1G107570.1 AT4G11175.1 21798944
AT5G51910.1 HORVU2Hr1G031180.5 AT4G16760.1 21798944
AT5G51910.1 HORVU6Hr1G001980.1 AT5G07840.1 21798944
AT5G51910.1 HORVU6Hr1G093960.1 AT5G08330.1 21798944
AT5G51910.1 HORVU5Hr1G080210.1 AT5G51910.1 21798944
AT5G51910.1 HORVU5Hr1G117990.1 AT5G51910.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS5B01G516200.1 Wheat cytosol, nucleus, peroxisome 88.53 95.13
TraesCS4A01G355900.1 Wheat nucleus 74.93 94.93
TraesCS5D01G516300.1 Wheat nucleus 86.93 94.77
Zm00001d031725_P001 Maize nucleus 66.13 70.86
OQU80770 Sorghum nucleus 66.67 69.64
Os08t0544800-01 Rice nucleus 66.93 67.29
GSMUA_Achr3P12320_001 Banana cytosol 21.07 39.11
CDY27099 Canola nucleus 25.07 33.69
AT5G51910.1 Thale cress nucleus 26.13 33.45
VIT_16s0022g02480.t01 Wine grape nucleus 14.93 33.14
HORVU2Hr1G090640.1 Barley plastid 17.6 32.67
VIT_15s0048g01150.t01 Wine grape nucleus 29.33 32.45
CDX91612 Canola nucleus 24.8 32.29
CDX95656 Canola nucleus 25.07 32.08
Bra022568.1-P Field mustard cytosol 25.07 31.65
KRH35393 Soybean nucleus 25.87 31.19
CDY53888 Canola nucleus 25.6 30.87
Bra000395.1-P Field mustard nucleus 25.6 30.87
KRH48289 Soybean nucleus 27.47 30.75
Bra004929.1-P Field mustard nucleus 26.4 30.56
CDX74756 Canola nucleus 26.4 30.46
KRG91429 Soybean nucleus 26.4 30.37
CDY18910 Canola nucleus 26.13 30.15
KRH65181 Soybean nucleus 26.93 30.06
PGSC0003DMT400094424 Potato cytosol 19.47 29.8
HORVU5Hr1G080210.1 Barley cytosol 21.6 29.67
KRH57263 Soybean nucleus 27.2 29.48
KRH03994 Soybean nucleus 26.67 29.41
Solyc03g006800.1.1 Tomato nucleus 24.53 28.22
HORVU6Hr1G059930.1 Barley plastid 17.33 28.14
AT2G45680.1 Thale cress cytosol 26.4 27.81
PGSC0003DMT400088049 Potato cytosol 19.73 27.41
PGSC0003DMT400062327 Potato nucleus 25.6 26.23
HORVU6Hr1G093960.1 Barley cytosol, peroxisome 18.67 26.22
Solyc08g080150.1.1 Tomato nucleus 25.07 25.41
VIT_02s0025g04590.t01 Wine grape nucleus 27.73 25.3
PGSC0003DMT400058534 Potato nucleus 24.8 24.87
HORVU4Hr1G019380.1 Barley nucleus, plastid 24.0 23.44
HORVU5Hr1G035980.1 Barley cytosol 21.6 21.26
HORVU6Hr1G075650.1 Barley nucleus 22.67 21.14
HORVU7Hr1G038130.1 Barley nucleus 21.6 20.25
HORVU3Hr1G095400.2 Barley golgi, plasma membrane 20.8 16.77
Protein Annotations
MapMan:15.5.19UniProt:A0A287SWJ0GO:GO:0003674GO:GO:0003676GO:GO:0003677GO:GO:0005488
GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005634GO:GO:0006139GO:GO:0006351
GO:GO:0006355GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009987EnsemblPlantsGene:HORVU5Hr1G117990
EnsemblPlants:HORVU5Hr1G117990.1InterPro:IPR017887PFAM:PF03634PFscan:PS51369PANTHER:PTHR31072PANTHER:PTHR31072:SF19
InterPro:TF_TCP_subgrInterPro:Transcription_factor_TCPUniParc:UPI000B46E437SEG:seg::
Description
No Description!
Coordinates
chrchr5H:+:651619385..651621064
Molecular Weight (calculated)
39390.2 Da
IEP (calculated)
7.012
GRAVY (calculated)
-0.499
Length
375 amino acids
Sequence
(BLAST)
001: LPRHAKTPRR RRGICPALME SEGQDRPPGQ GEPHAGGAAE PAAGAMAMVP MPVPVRGGYM VVPKPEPVDL FGGAGGNMAV VRKPPPRNRD RHTKVEGRGR
101: RIRMPAACAA RIFQLTRELG HKSDGETVRW LLQQSEPAIV AATGTGTVPA IATTVDGVLR IPTQSSSSAS SAVVDDDASA KRRRKLQPTR AAGPLATVPP
201: TAAYYSVLAD PLLQAGAGGA AISVASGLAP IGGQQGLVPV FAVPSAAGAA GGNHMIPQAT AVWMVPQPAG APNQPTQYWA FQSAPQLINL AGPQTMPAGA
301: VFPNVAADYH QQQQQQQQQQ QSASTVVQNT NSDHQHFSHH ITGAESHEQQ RRDHHPEEDD ADDDDEPVSD SSPED
Best Arabidopsis Sequence Match ( AT2G45680.1 )
(BLAST)
001: MATIQKLEEV AGKDQTLRAV DLTIINGVRN VETSRPFQVN PTVSLEPKAE PVMPSFSMSL APPSSTGPPL KRASTKDRHT KVEGRGRRIR MPATCAARIF
101: QLTRELGHKS DGETIRWLLE NAEPAIIAAT GTGTVPAIAM SVNGTLKIPT TTNADSDMGE NLMKKKRKRP SNSEYIDISD AVSASSGLAP IATTTTIQPP
201: QALASSTVAQ QLLPQGMYPM WAIPSNAMIP TVGAFFLIPQ IAGPSNQPQL LAFPAAAASP SSYVAAVQQA STMARPPPLQ VVPSSGFVSV SDVSGSNLSR
301: ATSVMAPSSS SGVTTGSSSS IATTTTHTLR DFSLEIYEKQ ELHQFMSTTT ARSSNH
Arabidopsis Description
TCP9Transcription factor TCP9 [Source:UniProtKB/Swiss-Prot;Acc:O64647]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.