Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX74756 | Canola | nucleus | 95.69 | 95.69 |
| Bra004929.1-P | Field mustard | nucleus | 95.08 | 95.37 |
| CDX95656 | Canola | nucleus | 73.85 | 81.91 |
| CDY53888 | Canola | nucleus | 77.54 | 81.03 |
| AT2G45680.1 | Thale cress | cytosol | 78.77 | 71.91 |
| KRH48289 | Soybean | nucleus | 52.31 | 50.75 |
| VIT_15s0048g01150.t01 | Wine grape | nucleus | 52.92 | 50.74 |
| KRH65181 | Soybean | nucleus | 51.69 | 50.0 |
| CDY27099 | Canola | nucleus | 40.0 | 46.59 |
| CDX91612 | Canola | nucleus | 40.0 | 45.14 |
| CDX78335 | Canola | nucleus | 19.69 | 36.36 |
| GSMUA_Achr3P12320_001 | Banana | cytosol | 22.46 | 36.14 |
| CDY36943 | Canola | nucleus | 20.92 | 35.98 |
| CDX87179 | Canola | nucleus | 23.69 | 35.81 |
| CDY40752 | Canola | cytosol | 19.38 | 35.59 |
| CDX81094 | Canola | nucleus | 19.69 | 35.56 |
| CDY16842 | Canola | nucleus | 23.38 | 35.35 |
| GSMUA_Achr11P... | Banana | nucleus | 24.31 | 34.96 |
| CDY46951 | Canola | nucleus | 23.69 | 33.48 |
| GSMUA_Achr11P... | Banana | cytosol, peroxisome, plastid | 32.62 | 33.33 |
| GSMUA_Achr4P27220_001 | Banana | nucleus | 22.46 | 33.18 |
| PGSC0003DMT400088049 | Potato | cytosol | 27.38 | 32.96 |
| PGSC0003DMT400094424 | Potato | cytosol | 24.62 | 32.65 |
| CDY40799 | Canola | nucleus | 22.77 | 32.17 |
| CDY44770 | Canola | cytosol | 22.15 | 32.0 |
| CDY21536 | Canola | nucleus | 23.08 | 31.78 |
| GSMUA_Achr5P03320_001 | Banana | cytosol | 18.15 | 31.22 |
| CDY60249 | Canola | cytosol | 19.69 | 30.77 |
| GSMUA_Achr8P00050_001 | Banana | cytoskeleton, cytosol, peroxisome | 32.31 | 30.61 |
| CDY45760 | Canola | nucleus | 22.77 | 30.58 |
| TraesCS4A01G355900.1 | Wheat | nucleus | 27.08 | 29.73 |
| CDX88010 | Canola | nucleus | 22.77 | 29.25 |
| CDY24170 | Canola | nucleus | 21.85 | 29.22 |
| CDY48964 | Canola | nucleus | 19.69 | 29.09 |
| Zm00001d031725_P001 | Maize | nucleus | 30.77 | 28.57 |
| TraesCS5D01G516300.1 | Wheat | nucleus | 30.15 | 28.49 |
| TraesCS5B01G516200.1 | Wheat | cytosol, nucleus, peroxisome | 30.15 | 28.08 |
| OQU80770 | Sorghum | nucleus | 30.77 | 27.86 |
| Os08t0544800-01 | Rice | nucleus | 31.69 | 27.61 |
| CDY20065 | Canola | cytosol | 22.46 | 27.14 |
| CDY28576 | Canola | nucleus | 26.15 | 26.73 |
| CDY00171 | Canola | nucleus | 22.46 | 26.45 |
| HORVU5Hr1G117990.1 | Barley | cytosol, mitochondrion, nucleus | 30.15 | 26.13 |
| CDY68276 | Canola | nucleus, plastid | 25.54 | 25.86 |
| CDY01754 | Canola | nucleus, plastid | 25.54 | 25.7 |
| CDY52403 | Canola | nucleus | 23.08 | 24.59 |
| CDY13675 | Canola | nucleus | 23.08 | 24.12 |
| CDX72856 | Canola | nucleus | 24.62 | 23.95 |
| CDX96370 | Canola | nucleus | 24.62 | 23.88 |
| CDY28577 | Canola | cytosol | 17.54 | 23.46 |
| HORVU5Hr1G080210.1 | Barley | cytosol | 18.77 | 22.34 |
| CDY03666 | Canola | nucleus, plastid | 24.31 | 22.25 |
| CDX82193 | Canola | nucleus, plastid | 24.0 | 22.16 |
| EER99208 | Sorghum | nucleus | 20.92 | 20.86 |
| CDY39914 | Canola | nucleus, plastid | 25.23 | 20.81 |
| CDY71135 | Canola | nucleus | 24.92 | 20.66 |
| Zm00001d006165_P001 | Maize | nucleus | 20.92 | 20.61 |
| TraesCS5A01G309300.1 | Wheat | cytosol, nucleus, peroxisome | 20.62 | 19.82 |
| TraesCS5B01G310000.1 | Wheat | cytosol, nucleus, peroxisome | 20.62 | 19.76 |
| TraesCS5D01G316300.1 | Wheat | nucleus | 20.31 | 19.76 |
| Os09t0521300-00 | Rice | nucleus | 21.85 | 18.64 |
Protein Annotations
| MapMan:15.5.19 | UniProt:A0A078FWV3 | EnsemblPlants:CDY18910 | ProteinID:CDY18910 | ProteinID:CDY18910.1 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00006103001 | InterPro:IPR017887 | PFAM:PF03634 | PFscan:PS51369 |
| PANTHER:PTHR31072 | PANTHER:PTHR31072:SF69 | InterPro:TF_TCP_subgr | InterPro:Transcription_factor_TCP | UniParc:UPI0004EF4BB6 | SEG:seg |
Description
BnaC04g04400DBnaC04g04400D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FWV3]
Coordinates
chrLK032090:+:262909..263986
Molecular Weight (calculated)
34670.2 Da
IEP (calculated)
10.034
GRAVY (calculated)
-0.277
Length
325 amino acids
Sequence
(BLAST)
(BLAST)
001: MATIKHHEDE RLRAVDLTSK PFEVNNAVSL EPKTEPSLES SSHQLQVPSI SMSLAPPSRP PLKRASTKDR HTKVEGRGRR IRMPATCAAR IFQLTRELGH
101: RSDGETIRWL LENAEPAIIA ATGTGTVPAI AMSVNGTLKI PTTTNADSDV GDNSAKKRRK RPSNSEYIDI NEAVTVSVSS GLAPISSGLA PVSTVAQQTL
201: PQGMIPMWAI PSNAVIPAVG AFFLVPHVAG PTNQPQMLAF PAAPPSSYVA AVQQASLMAR PPFVSVPDVT RSTPSVMAPS SSSGVTNGGS SSSTTNMLRD
301: FSLEIYEKQE LHQFMSTTTA RSSNH
101: RSDGETIRWL LENAEPAIIA ATGTGTVPAI AMSVNGTLKI PTTTNADSDV GDNSAKKRRK RPSNSEYIDI NEAVTVSVSS GLAPISSGLA PVSTVAQQTL
201: PQGMIPMWAI PSNAVIPAVG AFFLVPHVAG PTNQPQMLAF PAAPPSSYVA AVQQASLMAR PPFVSVPDVT RSTPSVMAPS SSSGVTNGGS SSSTTNMLRD
301: FSLEIYEKQE LHQFMSTTTA RSSNH
001: MATIQKLEEV AGKDQTLRAV DLTIINGVRN VETSRPFQVN PTVSLEPKAE PVMPSFSMSL APPSSTGPPL KRASTKDRHT KVEGRGRRIR MPATCAARIF
101: QLTRELGHKS DGETIRWLLE NAEPAIIAAT GTGTVPAIAM SVNGTLKIPT TTNADSDMGE NLMKKKRKRP SNSEYIDISD AVSASSGLAP IATTTTIQPP
201: QALASSTVAQ QLLPQGMYPM WAIPSNAMIP TVGAFFLIPQ IAGPSNQPQL LAFPAAAASP SSYVAAVQQA STMARPPPLQ VVPSSGFVSV SDVSGSNLSR
301: ATSVMAPSSS SGVTTGSSSS IATTTTHTLR DFSLEIYEKQ ELHQFMSTTT ARSSNH
101: QLTRELGHKS DGETIRWLLE NAEPAIIAAT GTGTVPAIAM SVNGTLKIPT TTNADSDMGE NLMKKKRKRP SNSEYIDISD AVSASSGLAP IATTTTIQPP
201: QALASSTVAQ QLLPQGMYPM WAIPSNAMIP TVGAFFLIPQ IAGPSNQPQL LAFPAAAASP SSYVAAVQQA STMARPPPLQ VVPSSGFVSV SDVSGSNLSR
301: ATSVMAPSSS SGVTTGSSSS IATTTTHTLR DFSLEIYEKQ ELHQFMSTTT ARSSNH
Arabidopsis Description
TCP9Transcription factor TCP9 [Source:UniProtKB/Swiss-Prot;Acc:O64647]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.