Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY20065 | Canola | cytosol | 87.68 | 89.96 |
| Bra039096.1-P | Field mustard | nucleus | 88.77 | 88.13 |
| CDY13675 | Canola | nucleus | 79.35 | 70.42 |
| AT3G27010.1 | Thale cress | nucleus | 78.26 | 68.79 |
| CDY52403 | Canola | nucleus | 74.64 | 67.54 |
| VIT_14s0068g01690.t01 | Wine grape | nucleus | 56.52 | 52.7 |
| PGSC0003DMT400052203 | Potato | nucleus | 43.48 | 51.72 |
| GSMUA_AchrUn_... | Banana | nucleus | 39.49 | 48.02 |
| Solyc02g068200.1.1 | Tomato | nucleus | 47.1 | 47.79 |
| PGSC0003DMT400090661 | Potato | nucleus | 48.19 | 47.67 |
| KRG94577 | Soybean | nucleus | 56.88 | 47.58 |
| KRH06910 | Soybean | nucleus | 56.88 | 45.51 |
| GSMUA_Achr11P... | Banana | nucleus | 39.13 | 43.37 |
| CDY36943 | Canola | nucleus | 25.72 | 37.57 |
| Zm00001d011985_P001 | Maize | nucleus | 41.67 | 36.51 |
| Os01t0924400-01 | Rice | nucleus | 40.58 | 35.33 |
| CDX78335 | Canola | nucleus | 22.46 | 35.23 |
| TraesCS3D01G428700.1 | Wheat | nucleus | 42.39 | 34.82 |
| EES01992 | Sorghum | nucleus | 40.94 | 34.77 |
| Zm00001d042305_P001 | Maize | cytosol, mitochondrion, nucleus | 40.58 | 34.57 |
| CDY40752 | Canola | cytosol | 22.1 | 34.46 |
| CDX81094 | Canola | nucleus | 22.46 | 34.44 |
| TraesCS3A01G436100.1 | Wheat | nucleus, plastid | 42.39 | 34.31 |
| CDY60249 | Canola | cytosol | 25.36 | 33.65 |
| TraesCS3B01G470700.1 | Wheat | nucleus | 42.39 | 33.52 |
| CDY24170 | Canola | nucleus | 28.26 | 32.1 |
| CDY48964 | Canola | nucleus | 25.36 | 31.82 |
| CDX87179 | Canola | nucleus | 24.64 | 31.63 |
| CDY16842 | Canola | nucleus | 24.64 | 31.63 |
| CDY44770 | Canola | cytosol | 24.28 | 29.78 |
| CDY46951 | Canola | nucleus | 24.64 | 29.57 |
| CDY40799 | Canola | nucleus | 23.91 | 28.7 |
| CDY21536 | Canola | nucleus | 23.91 | 27.97 |
| CDY45760 | Canola | nucleus | 24.28 | 27.69 |
| CDX88010 | Canola | nucleus | 24.64 | 26.88 |
| CDY27099 | Canola | nucleus | 26.09 | 25.81 |
| CDY28576 | Canola | nucleus | 29.71 | 25.79 |
| CDY01754 | Canola | nucleus, plastid | 30.07 | 25.7 |
| CDY68276 | Canola | nucleus, plastid | 29.71 | 25.55 |
| HORVU3Hr1G095400.2 | Barley | golgi, plasma membrane | 42.75 | 25.38 |
| CDX95656 | Canola | nucleus | 26.81 | 25.26 |
| CDX91612 | Canola | nucleus | 25.72 | 24.65 |
| CDY53888 | Canola | nucleus | 27.17 | 24.12 |
| CDY28577 | Canola | cytosol | 20.65 | 23.46 |
| CDX74756 | Canola | nucleus | 26.81 | 22.77 |
| CDY18910 | Canola | nucleus | 26.45 | 22.46 |
| CDX72856 | Canola | nucleus | 24.64 | 20.36 |
| CDX96370 | Canola | nucleus | 24.64 | 20.3 |
| CDY71135 | Canola | nucleus | 28.62 | 20.15 |
| CDY39914 | Canola | nucleus, plastid | 27.9 | 19.54 |
| CDY03666 | Canola | nucleus, plastid | 23.91 | 18.59 |
| CDX82193 | Canola | nucleus, plastid | 23.55 | 18.47 |
Protein Annotations
| EnsemblPlants:CDY00171 | EnsemblPlantsGene:GSBRNA2T00109688001 | InterPro:IPR017887 | InterPro:TF_TCP_subgr | InterPro:Transcription_factor_TCP | PANTHER:PTHR31072 |
| PANTHER:PTHR31072:SF4 | PFAM:PF03634 | PFscan:PS51369 | ProteinID:CDY00171 | ProteinID:CDY00171.1 | SEG:seg |
| UniParc:UPI0004EE9DDC | MapMan:15.5.19 | MapMan:27.1.5.2 | : | : | : |
Description
BnaC09g01300D
Coordinates
chrLK031916:+:1155554..1156562
Molecular Weight (calculated)
29376.4 Da
IEP (calculated)
6.746
GRAVY (calculated)
-0.541
Length
276 amino acids
Sequence
(BLAST)
(BLAST)
001: MDPKNPNPHQ VPNFLSPPPQ PRDASDDNKE VNDFQIVVAS DKEPNNNGKK QLGPKRSSNK DRHTKVEGRG RRIRMPALCA ARIFQLTREL GHKSDGETIQ
101: WLLQQAEPSL IAATGSGTVP ASALASAASA VVSNQGGSLT AGLMISHHDL DRGGGSSSGR PSWGEGGGEV WPNVAGYRIG FPGFDFPGGA MSFASIFGAS
201: GGGNGNQMLG LELGLSQEGN VGILNPQIYQ QMAQAQAQAQ GRVLHHTLHH NPGHEDHQQE SLNIYMLIET SELISI
101: WLLQQAEPSL IAATGSGTVP ASALASAASA VVSNQGGSLT AGLMISHHDL DRGGGSSSGR PSWGEGGGEV WPNVAGYRIG FPGFDFPGGA MSFASIFGAS
201: GGGNGNQMLG LELGLSQEGN VGILNPQIYQ QMAQAQAQAQ GRVLHHTLHH NPGHEDHQQE SLNIYMLIET SELISI
001: MDPKNLNRHQ VPNFLNPPPP PRNQGLVDDD AASAVVSDEN RKPTTEIKDF QIVVSASDKE PNKKSQNQNQ LGPKRSSNKD RHTKVEGRGR RIRMPALCAA
101: RIFQLTRELG HKSDGETIQW LLQQAEPSII AATGSGTIPA SALASSAATS NHHQGGSLTA GLMISHDLDG GSSSSGRPLN WGIGGGEGVS RSSLPTGLWP
201: NVAGFGSGVP TTGLMSEGAG YRIGFPGFDF PGVGHMSFAS ILGGNHNQMP GLELGLSQEG NVGVLNPQSF TQIYQQMGQA QAQAQGRVLH HMHHNHEEHQ
301: QESGEKDDSQ GSGR
101: RIFQLTRELG HKSDGETIQW LLQQAEPSII AATGSGTIPA SALASSAATS NHHQGGSLTA GLMISHDLDG GSSSSGRPLN WGIGGGEGVS RSSLPTGLWP
201: NVAGFGSGVP TTGLMSEGAG YRIGFPGFDF PGVGHMSFAS ILGGNHNQMP GLELGLSQEG NVGVLNPQSF TQIYQQMGQA QAQAQGRVLH HMHHNHEEHQ
301: QESGEKDDSQ GSGR
Arabidopsis Description
TCP20TCP20 [Source:UniProtKB/TrEMBL;Acc:A0A178VAT1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.