Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G428700.1 | Wheat | nucleus | 78.23 | 73.81 |
| Zm00001d011985_P001 | Maize | nucleus | 71.92 | 72.38 |
| TraesCS3A01G436100.1 | Wheat | nucleus, plastid | 77.6 | 72.14 |
| EES01992 | Sorghum | nucleus | 73.19 | 71.38 |
| TraesCS3B01G470700.1 | Wheat | nucleus | 78.23 | 71.06 |
| Zm00001d042305_P001 | Maize | cytosol, mitochondrion, nucleus | 71.92 | 70.37 |
| GSMUA_AchrUn_... | Banana | nucleus | 38.8 | 54.19 |
| GSMUA_Achr11P... | Banana | nucleus | 41.96 | 53.41 |
| HORVU3Hr1G095400.2 | Barley | golgi, plasma membrane | 76.66 | 52.26 |
| GSMUA_Achr11P... | Banana | nucleus | 41.01 | 45.3 |
| PGSC0003DMT400052203 | Potato | nucleus | 32.49 | 44.4 |
| GSMUA_Achr1P27500_001 | Banana | nucleus | 40.06 | 43.94 |
| VIT_14s0068g01690.t01 | Wine grape | nucleus | 39.75 | 42.57 |
| GSMUA_AchrUn_... | Banana | cytosol, extracellular, nucleus | 28.39 | 42.45 |
| CDY20065 | Canola | cytosol | 35.96 | 42.38 |
| GSMUA_Achr7P02680_001 | Banana | nucleus | 39.12 | 42.18 |
| GSMUA_Achr7P23010_001 | Banana | nucleus | 40.06 | 41.91 |
| Solyc02g068200.1.1 | Tomato | nucleus | 35.96 | 41.91 |
| GSMUA_Achr5P25030_001 | Banana | nucleus | 37.54 | 41.46 |
| Os03t0422702-00 | Rice | cytosol, plastid | 16.4 | 41.27 |
| PGSC0003DMT400090661 | Potato | nucleus | 36.28 | 41.22 |
| GSMUA_Achr10P... | Banana | nucleus | 30.28 | 40.85 |
| AT3G27010.1 | Thale cress | nucleus | 40.38 | 40.76 |
| CDY00171 | Canola | nucleus | 35.33 | 40.58 |
| Bra039096.1-P | Field mustard | nucleus | 35.33 | 40.29 |
| Bra025244.1-P | Field mustard | nucleus | 38.8 | 40.07 |
| CDY13675 | Canola | nucleus | 38.8 | 39.55 |
| KRG94577 | Soybean | nucleus | 41.01 | 39.39 |
| CDY52403 | Canola | nucleus | 37.22 | 38.69 |
| KRH06910 | Soybean | nucleus | 41.96 | 38.55 |
| Os04t0542302-00 | Rice | cytosol, mitochondrion, nucleus | 21.14 | 35.26 |
| GSMUA_Achr6P07930_001 | Banana | cytosol | 23.97 | 32.07 |
| Os02t0828566-01 | Rice | nucleus | 22.71 | 30.51 |
| Os04t0526000-01 | Rice | plastid | 19.24 | 29.61 |
| Os04t0194600-01 | Rice | plastid | 16.4 | 29.55 |
| Os02t0635800-01 | Rice | nucleus | 19.56 | 29.38 |
| Os06t0226700-01 | Rice | nucleus | 28.39 | 23.26 |
| Os02t0747400-01 | Rice | nucleus | 29.97 | 23.17 |
| Os12t0173300-00 | Rice | nucleus | 29.65 | 22.49 |
| Os11t0175700-00 | Rice | nucleus, plastid | 24.92 | 19.46 |
| Os08t0544800-01 | Rice | nucleus | 22.4 | 19.03 |
| Os09t0521300-00 | Rice | nucleus | 22.71 | 18.9 |
Protein Annotations
| MapMan:15.5.19 | MapMan:27.1.5.2 | EntrezGene:4327261 | EMBL:AK072037 | ProteinID:BAD88033.1 | ProteinID:BAD88310.1 |
| ProteinID:BAF07161.1 | ProteinID:BAS75973.1 | ProteinID:EEE55920.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| InterPro:IPR017887 | EnsemblPlantsGene:Os01g0924400 | EnsemblPlants:Os01t0924400-01 | PFAM:PF03634 | PFscan:PS51369 | PANTHER:PTHR31072 |
| PANTHER:PTHR31072:SF1 | UniProt:Q5JJP7 | InterPro:TF_TCP_subgr | InterPro:Transcription_factor_TCP | UniParc:UPI00004C2B55 | RefSeq:XP_015621786.1 |
| SEG:seg | : | : | : | : | : |
Description
TEOSINTE BRANCHED/CYCLOIDEA/PROLIFERATING CELL FACTOR 6Similar to Auxin-induced basic helix-loop-helix transcription factor. (Os01t0924400-01)
Coordinates
chr1:+:40477240..40479093
Molecular Weight (calculated)
33176.6 Da
IEP (calculated)
6.924
GRAVY (calculated)
-0.714
Length
317 amino acids
Sequence
(BLAST)
(BLAST)
001: MDPKFPPPPP LNKTEPTTTT TNQQHHHDEQ QQQHRLQIQV HPQQQEQQDG GGGGGKDQQQ QQQMQVVVAA AAGERRMQGL GPKRSSNKDR HTKVDGRGRR
101: IRMPALCAAR IFQLTRELGH KSDGETVQWL LQQAEPAIVA ATGTGTIPAS ALASVAPSLP SPNSALSRSH HHHHHMWAAA PPTASAGFAG AGFSGADSGV
201: IGGIMQRMGI PAGIELQGGG AGGLGGGGGG GGGHIGFAPM FASHAAAAAA MPGLELGLSQ DGHIGVLAAQ SLSQFYHQVG AAGQLQHQHQ HHHQQQQQQQ
301: DGEDNRDDGE SDEESGQ
101: IRMPALCAAR IFQLTRELGH KSDGETVQWL LQQAEPAIVA ATGTGTIPAS ALASVAPSLP SPNSALSRSH HHHHHMWAAA PPTASAGFAG AGFSGADSGV
201: IGGIMQRMGI PAGIELQGGG AGGLGGGGGG GGGHIGFAPM FASHAAAAAA MPGLELGLSQ DGHIGVLAAQ SLSQFYHQVG AAGQLQHQHQ HHHQQQQQQQ
301: DGEDNRDDGE SDEESGQ
001: MDPKNLNRHQ VPNFLNPPPP PRNQGLVDDD AASAVVSDEN RKPTTEIKDF QIVVSASDKE PNKKSQNQNQ LGPKRSSNKD RHTKVEGRGR RIRMPALCAA
101: RIFQLTRELG HKSDGETIQW LLQQAEPSII AATGSGTIPA SALASSAATS NHHQGGSLTA GLMISHDLDG GSSSSGRPLN WGIGGGEGVS RSSLPTGLWP
201: NVAGFGSGVP TTGLMSEGAG YRIGFPGFDF PGVGHMSFAS ILGGNHNQMP GLELGLSQEG NVGVLNPQSF TQIYQQMGQA QAQAQGRVLH HMHHNHEEHQ
301: QESGEKDDSQ GSGR
101: RIFQLTRELG HKSDGETIQW LLQQAEPSII AATGSGTIPA SALASSAATS NHHQGGSLTA GLMISHDLDG GSSSSGRPLN WGIGGGEGVS RSSLPTGLWP
201: NVAGFGSGVP TTGLMSEGAG YRIGFPGFDF PGVGHMSFAS ILGGNHNQMP GLELGLSQEG NVGVLNPQSF TQIYQQMGQA QAQAQGRVLH HMHHNHEEHQ
301: QESGEKDDSQ GSGR
Arabidopsis Description
TCP20TCP20 [Source:UniProtKB/TrEMBL;Acc:A0A178VAT1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.