Factsheet for Os02t0635800-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 2
plastid 4

Predictors

GFP

MS/MS

Papers

nucleus: 19621931

msms PMID: 19621931 doi

T Aki, S Yanagisawa

Department of Applied Biological Chemistry, The University of Tokyo, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6A01G233800.1	Wheat	plastid	70.62	73.4
TraesCS6B01G262600.1	Wheat	plastid	68.72	72.86
TraesCS6D01G216100.1	Wheat	plastid	70.14	71.84
EES05476	Sorghum	plastid	72.04	68.47
Zm00001d017350_P001	Maize	plastid	69.67	66.82
Zm00001d051216_P001	Maize	plastid	67.3	65.14
Os04t0526000-01	Rice	plastid	62.56	64.08
HORVU6Hr1G059930.1	Barley	plastid	65.88	60.17
Os03t0422702-00	Rice	cytosol, plastid	34.12	57.14
Os02t0828566-01	Rice	nucleus	47.39	42.37
Os04t0194600-01	Rice	plastid	28.91	34.66
Os04t0542302-00	Rice	cytosol, mitochondrion, nucleus	27.49	30.53
GSMUA_Achr2P10690_001	Banana	cytosol, mitochondrion, nucleus, plastid	24.17	24.17
Os12t0173300-00	Rice	nucleus	39.34	19.86
Os11t0175700-00	Rice	nucleus, plastid	37.91	19.7
Os01t0924400-01	Rice	nucleus	29.38	19.56
Os06t0226700-01	Rice	nucleus	35.07	19.12
Os08t0544800-01	Rice	nucleus	32.23	18.23
Os02t0747400-01	Rice	nucleus	33.18	17.07
Os09t0521300-00	Rice	nucleus	29.86	16.54

Protein Annotations

MapMan:15.5.19	EntrezGene:4330080	EMBL:AK061568	ProteinID:BAD25071.1	ProteinID:BAF09435.1	ProteinID:BAS79940.1
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR017887	EnsemblPlantsGene:Os02g0635800	EnsemblPlants:Os02t0635800-01
PFAM:PF03634	PFscan:PS51369	PANTHER:PTHR31072	PANTHER:PTHR31072:SF31	UniProt:Q6H878	InterPro:TF_TCP_subgr
InterPro:Transcription_factor_TCP	UniParc:UPI00003B4336	RefSeq:XP_015624938.1	SEG:seg	:	:

Description

TEOSINTE BRANCHED/CYCLOIDEA/PROLIFERATING CELL FACTOR 7Transcription factor, TCP domain containing protein. (Os02t0635800-01)

Coordinates

chr2:+:25497325..25498429

Molecular Weight (calculated)

21821.8 Da

IEP (calculated)

10.811

GRAVY (calculated)

-0.157

Length

211 amino acids

Sequence
(BLAST)

001: MSSRDAAATF HVYQPVQIPT ATVAPAAAVS AAPAEAVAQL VPAPSKKAAG AAGGKDRHSK VNGRGRRVRM PIVCAARVFQ LTRELGLKSD GQTIEWLLRQ
101: AEPSILAATG TGTTPAAFVS SSAPSTSSSH QHTLLGKRQR QESAAADAVS VAGAASAFWA ALPAPGRPDA WGFSPLDAQP TYVPMAQAHH HHLNLLAALS
201: GAARRAEEES R

Best Arabidopsis Sequence Match ( AT5G23280.1 )
(BLAST)

001: MSINNNNNNN NNNNDGLMIS SNGALIEQQP SVVVKKPPAK DRHSKVDGRG RRIRMPIICA ARVFQLTREL GHKSDGQTIE WLLRQAEPSI IAATGTGTTP
101: ASFSTASVSI RGATNSTSLD HKPTSLLGGT SPFILGKRVR ADEDSNNSHN HSSVGKDETF TTTPAGFWAV PARPDFGQVW SFAGAPQEMF LQQQHHHQQP
201: LFVHQQQQQQ AAMGEASAAR VGNYLPGHLN LLASLSGGSP GSDRREEDPR

Arabidopsis Description

TCP7Transcription factor TCP7 [Source:UniProtKB/Swiss-Prot;Acc:Q9FMX2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.