Factsheet for Zm00001d017350_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	plastid
PProwler:	plastid
WoLF PSORT:	nucleus
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d051216_P001	Maize	plastid	82.27	83.03
EES05476	Sorghum	plastid	82.73	81.98
TraesCS6A01G233800.1	Wheat	plastid	64.55	69.95
TraesCS6D01G216100.1	Wheat	plastid	65.45	69.9
Os02t0635800-01	Rice	nucleus	66.82	69.67
TraesCS6B01G262600.1	Wheat	plastid	62.27	68.84
Zm00001d025896_P001	Maize	plastid	58.18	61.84
HORVU6Hr1G059930.1	Barley	plastid	59.55	56.71
Zm00001d018530_P001	Maize	plastid	43.18	45.89
Zm00001d025033_P001	Maize	plastid	25.0	31.25
GSMUA_Achr2P10690_001	Banana	cytosol, mitochondrion, nucleus, plastid	24.55	25.59
Zm00001d004791_P001	Maize	mitochondrion, nucleus	19.55	20.98
Zm00001d011985_P001	Maize	nucleus	28.18	19.68
Zm00001d044836_P001	Maize	nucleus	31.82	19.61
Zm00001d023565_P001	Maize	nucleus	35.91	19.51
Zm00001d053020_P001	Maize	cytosol, nucleus, plastid	33.64	19.12
Zm00001d006165_P001	Maize	nucleus	28.64	19.09
Zm00001d042305_P001	Maize	cytosol, mitochondrion, nucleus	27.73	18.83
Zm00001d037221_P001	Maize	cytosol, nucleus, peroxisome	32.27	18.73
Zm00001d031725_P001	Maize	nucleus	29.09	18.29
Zm00001d041866_P001	Maize	nucleus	34.55	18.27
Zm00001d052256_P001	Maize	cytosol, nucleus, peroxisome	31.36	17.74
Zm00001d018045_P001	Maize	cytosol, nucleus, peroxisome	31.36	17.25
Zm00001d031597_P001	Maize	cytosol, nucleus, plasma membrane, plastid	19.09	15.22
Zm00001d038444_P001	Maize	nucleus	19.55	14.48
Zm00001d044344_P001	Maize	nucleus	19.55	14.48

Protein Annotations

EntrezGene:103627461	MapMan:15.5.19	MapMan:27.1.5.3	UniProt:A0A060D1M6	ProteinID:AIB05190.1	ProteinID:AQK72959.1
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR017887	PFAM:PF03634	PFscan:PS51369
PANTHER:PTHR31072	PANTHER:PTHR31072:SF31	InterPro:TF_TCP_subgr	InterPro:Transcription_factor_TCP	UniParc:UPI000220CD55	EnsemblPlantsGene:Zm00001d017350
EnsemblPlants:Zm00001d017350_P001	EnsemblPlants:Zm00001d017350_T001	SEG:seg	:	:	:

Description

TCP-transcription factor 16Transcription factor TCP21

Coordinates

chr5:-:193493247..193493909

Molecular Weight (calculated)

22762.9 Da

IEP (calculated)

10.572

GRAVY (calculated)

-0.221

Length

220 amino acids

Sequence
(BLAST)

001: MATTREVSSS AAAMFHVYQT IPMPTPSTAA AGGGGAMVSV SAPAKPGKKE GGGKDRHSKV NGRGRRVRMP IVCAARVFQL TRELGLKSDG QTIEWLLRQA
101: EPSIVAATGS GTTPAVFVSS SAPSTSSSSS HYHHQQQATV VLGKRPREEG DAAGSVFWAA LPAAPRATEA WGFSPLEAQA AAAAAAAAYV PMAQAQAQHH
201: HLNLLAALSG AARRAEEETR

Best Arabidopsis Sequence Match ( AT5G23280.1 )
(BLAST)

001: MSINNNNNNN NNNNDGLMIS SNGALIEQQP SVVVKKPPAK DRHSKVDGRG RRIRMPIICA ARVFQLTREL GHKSDGQTIE WLLRQAEPSI IAATGTGTTP
101: ASFSTASVSI RGATNSTSLD HKPTSLLGGT SPFILGKRVR ADEDSNNSHN HSSVGKDETF TTTPAGFWAV PARPDFGQVW SFAGAPQEMF LQQQHHHQQP
201: LFVHQQQQQQ AAMGEASAAR VGNYLPGHLN LLASLSGGSP GSDRREEDPR

Arabidopsis Description

TCP7Transcription factor TCP7 [Source:UniProtKB/Swiss-Prot;Acc:Q9FMX2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.