Factsheet for Zm00001d042305_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus, cytosol

Predictor Summary:

mitochondrion 3
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion, nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES01992	Sorghum	nucleus	90.12	89.85
Zm00001d011985_P001	Maize	nucleus	86.73	89.21
Os01t0924400-01	Rice	nucleus	70.37	71.92
TraesCS3A01G436100.1	Wheat	nucleus, plastid	74.07	70.38
TraesCS3D01G428700.1	Wheat	nucleus	72.84	70.24
TraesCS3B01G470700.1	Wheat	nucleus	75.31	69.91
GSMUA_AchrUn_...	Banana	nucleus	38.89	55.51
GSMUA_Achr11P...	Banana	nucleus	39.51	51.41
HORVU3Hr1G095400.2	Barley	golgi, plasma membrane	73.15	50.97
GSMUA_Achr11P...	Banana	nucleus	42.28	47.74
GSMUA_Achr1P27500_001	Banana	nucleus	40.12	44.98
PGSC0003DMT400052203	Potato	nucleus	31.79	44.4
VIT_14s0068g01690.t01	Wine grape	nucleus	39.81	43.58
GSMUA_Achr7P23010_001	Banana	nucleus	40.74	43.56
GSMUA_Achr7P02680_001	Banana	nucleus	39.51	43.54
CDY20065	Canola	cytosol	35.8	43.12
GSMUA_AchrUn_...	Banana	cytosol, extracellular, nucleus	28.09	42.92
GSMUA_Achr10P...	Banana	nucleus	30.86	42.55
Solyc02g068200.1.1	Tomato	nucleus	35.19	41.91
GSMUA_Achr5P25030_001	Banana	nucleus	37.04	41.81
AT3G27010.1	Thale cress	nucleus	40.43	41.72
PGSC0003DMT400090661	Potato	nucleus	35.8	41.58
Bra039096.1-P	Field mustard	nucleus	35.19	41.01
CDY00171	Canola	nucleus	34.57	40.58
Bra025244.1-P	Field mustard	nucleus	37.65	39.74
CDY13675	Canola	nucleus	37.65	39.23
KRG94577	Soybean	nucleus	39.81	39.09
KRH06910	Soybean	nucleus	41.36	38.84
CDY52403	Canola	nucleus	36.42	38.69
Zm00001d031597_P001	Maize	cytosol, nucleus, plasma membrane, plastid	29.63	34.78
Zm00001d018530_P001	Maize	plastid	22.22	34.78
GSMUA_Achr6P07930_001	Banana	cytosol	23.77	32.49
Zm00001d038444_P001	Maize	nucleus	29.63	32.32
Zm00001d044344_P001	Maize	nucleus	29.32	31.99
Zm00001d025033_P001	Maize	plastid	16.98	31.25
Zm00001d025896_P001	Maize	plastid	18.83	29.47
Zm00001d017350_P001	Maize	plastid	18.83	27.73
Zm00001d051216_P001	Maize	plastid	18.52	27.52
Zm00001d044836_P001	Maize	nucleus	26.23	23.81
Zm00001d052256_P001	Maize	cytosol, nucleus, peroxisome	28.09	23.39
Zm00001d018045_P001	Maize	cytosol, nucleus, peroxisome	28.7	23.25
Zm00001d023565_P001	Maize	nucleus	28.09	22.47
Zm00001d037221_P001	Maize	cytosol, nucleus, peroxisome	26.23	22.43
Zm00001d053020_P001	Maize	cytosol, nucleus, plastid	25.93	21.71
Zm00001d041866_P001	Maize	nucleus	27.16	21.15
Zm00001d031725_P001	Maize	nucleus	22.22	20.57
Zm00001d004791_P001	Maize	mitochondrion, nucleus	12.65	20.0
Zm00001d006165_P001	Maize	nucleus	19.14	18.79

Protein Annotations

EntrezGene:100272415	MapMan:15.5.19	MapMan:27.1.5.2	UniProt:B4FNI4	EMBL:BT038672	EMBL:BT068348
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR017887	EMBL:KJ726825	ProteinID:ONM34989.1
PFAM:PF03634	PFscan:PS51369	PANTHER:PTHR31072	PANTHER:PTHR31072:SF1	InterPro:TF_TCP_subgr	InterPro:Transcription_factor_TCP
UniParc:UPI00017B6D11	EnsemblPlantsGene:Zm00001d042305	EnsemblPlants:Zm00001d042305_P001	EnsemblPlants:Zm00001d042305_T001	SEG:seg	:

Description

TCP-transcription factor 8Transcription factor TCP11

Coordinates

chr3:-:160028234..160029208

Molecular Weight (calculated)

34349.0 Da

IEP (calculated)

6.897

GRAVY (calculated)

-0.735

Length

324 amino acids

Sequence
(BLAST)

001: MDPKFPTPLA LNKTEPTTAT TTTTSTAQHH QLDPKDYQQQ TAQHQEQQQH HHHPHLQIQI HQPPPPPQDG GGGVKEQQQL LQVVAQPGDR RQQALAPKRS
101: SNKDRHTKVD GRGRRIRMPA LCAARIFQLT RELGHKSDGE TVQWLLQQAE PAIVAATGTG TIPASALASV APSLPSPTSG LARPHHHHPH HMWAPSAGFS
201: SPSFLNSAGA GDGTGIGGIM QRMGVPAGLE LPGGGAAGGH IGFAPMFAGH AAAMPGLELG LSQDGHIGVL AAQSISQFYH QVGAAAGGSG QMQHPHGHQH
301: HHHQQQEDGE DDREDGESDD ESGQ

Best Arabidopsis Sequence Match ( AT3G27010.1 )
(BLAST)

001: MDPKNLNRHQ VPNFLNPPPP PRNQGLVDDD AASAVVSDEN RKPTTEIKDF QIVVSASDKE PNKKSQNQNQ LGPKRSSNKD RHTKVEGRGR RIRMPALCAA
101: RIFQLTRELG HKSDGETIQW LLQQAEPSII AATGSGTIPA SALASSAATS NHHQGGSLTA GLMISHDLDG GSSSSGRPLN WGIGGGEGVS RSSLPTGLWP
201: NVAGFGSGVP TTGLMSEGAG YRIGFPGFDF PGVGHMSFAS ILGGNHNQMP GLELGLSQEG NVGVLNPQSF TQIYQQMGQA QAQAQGRVLH HMHHNHEEHQ
301: QESGEKDDSQ GSGR

Arabidopsis Description

TCP20TCP20 [Source:UniProtKB/TrEMBL;Acc:A0A178VAT1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.