Factsheet for Zm00001d031597_P001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, plastid, nucleus, cytosol

Predictor Summary:

cytosol 1
mitochondrion 1
plastid 1
nucleus 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d038444_P001	Maize	nucleus	90.94	84.51
Zm00001d044344_P001	Maize	nucleus	90.58	84.18
Solyc02g094290.1.1	Tomato	cytosol	17.39	42.48
Zm00001d011985_P001	Maize	nucleus	36.96	32.38
Zm00001d042305_P001	Maize	cytosol, mitochondrion, nucleus	34.78	29.63
Zm00001d018530_P001	Maize	plastid	19.2	25.6
Zm00001d025033_P001	Maize	plastid	15.94	25.0
Zm00001d025896_P001	Maize	plastid	16.67	22.22
Zm00001d051216_P001	Maize	plastid	15.22	19.27
Zm00001d017350_P001	Maize	plastid	15.22	19.09
Zm00001d052256_P001	Maize	cytosol, nucleus, peroxisome	25.72	18.25
Zm00001d044836_P001	Maize	nucleus	22.83	17.65
Zm00001d018045_P001	Maize	cytosol, nucleus, peroxisome	25.0	17.25
Zm00001d037221_P001	Maize	cytosol, nucleus, peroxisome	23.55	17.15
Zm00001d053020_P001	Maize	cytosol, nucleus, plastid	22.46	16.02
Zm00001d023565_P001	Maize	nucleus	22.1	15.06
Zm00001d006165_P001	Maize	nucleus	17.75	14.85
Zm00001d041866_P001	Maize	nucleus	22.1	14.66
Zm00001d031725_P001	Maize	nucleus	18.12	14.29
Zm00001d004791_P001	Maize	mitochondrion, nucleus	9.06	12.2

Protein Annotations

MapMan:15.5.19	UniProt:A0A1D6KJT5	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR017887
ProteinID:ONM03190.1	PFAM:PF03634	PFscan:PS51369	PANTHER:PTHR31072	PANTHER:PTHR31072:SF1	InterPro:TF_TCP_subgr
InterPro:Transcription_factor_TCP	UniParc:UPI00022178DE	EnsemblPlantsGene:Zm00001d031597	EnsemblPlants:Zm00001d031597_P001	EnsemblPlants:Zm00001d031597_T001	SEG:seg

Description

TCP-transcription factor 42Transcription factor TCP11

Coordinates

chr1:-:195867646..195869138

Molecular Weight (calculated)

29556.9 Da

IEP (calculated)

10.461

GRAVY (calculated)

-0.767

Length

276 amino acids

Sequence
(BLAST)

001: MTVLHHSHLP TDTKAGAPVT KQKKGSESTK PDLVCFLLPR LGGSWCLCVS VCGDGPQVPP PPPLNKTEPT TATTTTTSTA QQQQLDPKDY HQQQQPAQHL
101: QIQIHQSPQQ DGGGRGKEEE QLQVVAQPGE RRQQPLAPKR SSNKDRHTKV DGRGRRIWMP ALCAARIFQL TRELDHNGER EDMERNRVRA WRLSSSVVAR
201: TAAGAAGAGR GIAGGGMRPR ILPPARYGGG IGMEEESRDG TGRPVFAAGM AAGGSWQTSG RTGLGSGGSL QSSLNS

Best Arabidopsis Sequence Match ( AT3G27010.1 )
(BLAST)

001: MDPKNLNRHQ VPNFLNPPPP PRNQGLVDDD AASAVVSDEN RKPTTEIKDF QIVVSASDKE PNKKSQNQNQ LGPKRSSNKD RHTKVEGRGR RIRMPALCAA
101: RIFQLTRELG HKSDGETIQW LLQQAEPSII AATGSGTIPA SALASSAATS NHHQGGSLTA GLMISHDLDG GSSSSGRPLN WGIGGGEGVS RSSLPTGLWP
201: NVAGFGSGVP TTGLMSEGAG YRIGFPGFDF PGVGHMSFAS ILGGNHNQMP GLELGLSQEG NVGVLNPQSF TQIYQQMGQA QAQAQGRVLH HMHHNHEEHQ
301: QESGEKDDSQ GSGR

Arabidopsis Description

TCP20TCP20 [Source:UniProtKB/TrEMBL;Acc:A0A178VAT1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.