Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400090661 | Potato | nucleus | 94.12 | 91.76 |
| PGSC0003DMT400052203 | Potato | nucleus | 58.09 | 68.1 |
| Solyc02g094290.1.1 | Tomato | cytosol | 27.57 | 66.37 |
| VIT_14s0068g01690.t01 | Wine grape | nucleus | 69.12 | 63.51 |
| KRG94577 | Soybean | nucleus | 67.28 | 55.45 |
| KRH06910 | Soybean | nucleus | 65.07 | 51.3 |
| CDY20065 | Canola | cytosol | 48.53 | 49.07 |
| Bra025244.1-P | Field mustard | nucleus | 54.78 | 48.53 |
| CDY13675 | Canola | nucleus | 54.78 | 47.91 |
| Bra039096.1-P | Field mustard | nucleus | 48.9 | 47.84 |
| AT3G27010.1 | Thale cress | nucleus | 54.78 | 47.45 |
| CDY00171 | Canola | nucleus | 47.79 | 47.1 |
| CDY52403 | Canola | nucleus | 51.47 | 45.9 |
| GSMUA_Achr5P25030_001 | Banana | nucleus | 45.22 | 42.86 |
| Os01t0924400-01 | Rice | nucleus | 41.91 | 35.96 |
| Solyc09g008030.1.1 | Tomato | plastid | 26.47 | 35.82 |
| Zm00001d011985_P001 | Maize | nucleus | 41.18 | 35.56 |
| Zm00001d042305_P001 | Maize | cytosol, mitochondrion, nucleus | 41.91 | 35.19 |
| EES01992 | Sorghum | nucleus | 41.54 | 34.77 |
| TraesCS3D01G428700.1 | Wheat | nucleus | 41.18 | 33.33 |
| TraesCS3A01G436100.1 | Wheat | nucleus, plastid | 41.54 | 33.14 |
| TraesCS3B01G470700.1 | Wheat | nucleus | 41.54 | 32.38 |
| Solyc01g008230.2.1 | Tomato | nucleus | 27.21 | 29.72 |
| Solyc04g009180.1.1 | Tomato | nucleus | 27.21 | 27.82 |
| Solyc06g065190.1.1 | Tomato | nucleus | 30.51 | 25.54 |
| HORVU3Hr1G095400.2 | Barley | golgi, plasma membrane | 41.54 | 24.3 |
| Solyc03g116320.2.1 | Tomato | nucleus | 35.29 | 23.47 |
| Solyc06g070900.2.1 | Tomato | nucleus | 34.56 | 22.6 |
| Solyc05g007420.1.1 | Tomato | nucleus | 31.25 | 22.19 |
| Solyc11g020670.1.1 | Tomato | nucleus | 30.15 | 21.93 |
| Solyc03g006800.1.1 | Tomato | nucleus | 25.74 | 21.47 |
| Solyc08g080150.1.1 | Tomato | nucleus | 26.1 | 19.19 |
| Solyc01g103780.2.1 | Tomato | nucleus | 29.41 | 17.98 |
Protein Annotations
| MapMan:15.5.19 | MapMan:27.1.5.2 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR017887 |
| UniProt:K4B7F2 | PFAM:PF03634 | PFscan:PS51369 | PANTHER:PTHR31072 | PANTHER:PTHR31072:SF4 | EnsemblPlantsGene:Solyc02g068200.1 |
| EnsemblPlants:Solyc02g068200.1.1 | InterPro:TF_TCP_subgr | InterPro:Transcription_factor_TCP | UniParc:UPI00018C813F | SEG:seg | : |
Description
No Description!
Coordinates
chr2:+:38217848..38218666
Molecular Weight (calculated)
29063.2 Da
IEP (calculated)
8.870
GRAVY (calculated)
-0.514
Length
272 amino acids
Sequence
(BLAST)
(BLAST)
001: MDPKQANHNN IKPTHDQIKE LQILKNDETN KVAAPKRKDR HTKVEGRGRR IRMPALCAAR IFQLTRELGH KSDGETIQWL LQQAEPSIIA ATGTGTIPAS
101: ALAAAASVSQ QGISVSAGLM IESGANIAGS GSSRSSNSRT NWPMICGNFG RPHLATAGMW PAPAPVVTSF GFQSSSAPSS ASLGSDSSNY YLQKIGFPGF
201: DLPAATSMNP MCFTSILGGS NQQLPGLELG LSQEGHLGVL NQIYQQARMQ HPQQQHQQQQ QSPEEDSQGS GH
101: ALAAAASVSQ QGISVSAGLM IESGANIAGS GSSRSSNSRT NWPMICGNFG RPHLATAGMW PAPAPVVTSF GFQSSSAPSS ASLGSDSSNY YLQKIGFPGF
201: DLPAATSMNP MCFTSILGGS NQQLPGLELG LSQEGHLGVL NQIYQQARMQ HPQQQHQQQQ QSPEEDSQGS GH
001: MDPKNLNRHQ VPNFLNPPPP PRNQGLVDDD AASAVVSDEN RKPTTEIKDF QIVVSASDKE PNKKSQNQNQ LGPKRSSNKD RHTKVEGRGR RIRMPALCAA
101: RIFQLTRELG HKSDGETIQW LLQQAEPSII AATGSGTIPA SALASSAATS NHHQGGSLTA GLMISHDLDG GSSSSGRPLN WGIGGGEGVS RSSLPTGLWP
201: NVAGFGSGVP TTGLMSEGAG YRIGFPGFDF PGVGHMSFAS ILGGNHNQMP GLELGLSQEG NVGVLNPQSF TQIYQQMGQA QAQAQGRVLH HMHHNHEEHQ
301: QESGEKDDSQ GSGR
101: RIFQLTRELG HKSDGETIQW LLQQAEPSII AATGSGTIPA SALASSAATS NHHQGGSLTA GLMISHDLDG GSSSSGRPLN WGIGGGEGVS RSSLPTGLWP
201: NVAGFGSGVP TTGLMSEGAG YRIGFPGFDF PGVGHMSFAS ILGGNHNQMP GLELGLSQEG NVGVLNPQSF TQIYQQMGQA QAQAQGRVLH HMHHNHEEHQ
301: QESGEKDDSQ GSGR
Arabidopsis Description
TCP20TCP20 [Source:UniProtKB/TrEMBL;Acc:A0A178VAT1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.