Factsheet for Solyc05g007420.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g062230.1.1
Solyc02g063150.2.1
Solyc02g068750.1.1
Solyc02g077840.1.1
Solyc02g084010.1.1
Solyc02g085950.2.1
Solyc02g087300.1.1
Solyc03g033590.1.1
Solyc03g034220.2.1
Solyc03g097440.2.1
Solyc03g098330.2.1
Solyc03g119660.1.1
Solyc05g009720.2.1
Solyc06g007640.2.1
Solyc06g072670.2.1
Solyc06g082930.2.1
Solyc08g006620.2.1
Solyc09g098120.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G69690.1	Solyc05g009720.2.1	AT1G25550.1	21798944
AT1G69690.1	Solyc02g077840.1.1	AT1G28360.1	21798944
AT1G69690.1	Solyc03g119660.1.1	AT1G49030.1	21798944
AT1G69690.1	Solyc08g006620.2.1	AT2G24860.1	21798944
AT1G69690.1	Solyc02g087300.1.1	AT2G30050.1	21798944
AT1G69690.1	Solyc09g098120.2.1	AT2G31985.1	21798944
AT1G69690.1	Solyc02g068750.1.1	AT4G22720.1	21798944
AT1G69690.1	Solyc03g098330.2.1	AT4G24900.1	21798944
AT1G69690.1	Solyc02g062230.1.1	AT4G36110.1	21798944
AT1G69690.1	Solyc02g084010.1.1	AT4G36110.1	21798944
AT1G69690.1	Solyc03g033590.1.1	AT4G36110.1	21798944
AT1G69690.1	Solyc02g063150.2.1	AT5G38420.1	21798944
AT1G69690.1	Solyc02g085950.2.1	AT5G38420.1	21798944
AT1G69690.1	Solyc03g034220.2.1	AT5G38420.1	21798944
AT1G69690.1	Solyc06g007640.2.1	AT5G48385.1	21798944
AT1G69690.1	Solyc06g082930.2.1	AT5G48385.1	21798944
AT1G69690.1	Solyc03g097440.2.1	AT5G50600.1	21798944
AT1G69690.1	Solyc06g072670.2.1	AT5G50600.1	21798944
AT1G69690.1	Solyc03g097440.2.1	AT5G50700.1	21798944
AT1G69690.1	Solyc06g072670.2.1	AT5G50700.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400008728	Potato	nucleus	90.6	93.53
Solyc02g094290.1.1	Tomato	cytosol	15.4	52.21
VIT_01s0026g02200.t01	Wine grape	nucleus	39.43	42.78
KRH49755	Soybean	nucleus	21.15	40.91
AT1G69690.1	Thale cress	nucleus, plastid	33.68	39.69
Bra004407.1-P	Field mustard	nucleus, plastid	33.16	39.56
CDY68276	Canola	nucleus, plastid	33.16	39.56
CDY01754	Canola	nucleus, plastid	33.16	39.32
CDY28576	Canola	nucleus	32.64	39.31
Bra003986.1-P	Field mustard	cytosol	25.07	39.18
CDY28577	Canola	cytosol	24.28	38.27
Bra007875.1-P	Field mustard	cytosol	24.28	37.8
Solyc03g116320.2.1	Tomato	nucleus	40.21	37.65
Solyc06g070900.2.1	Tomato	nucleus	40.73	37.5
KRH74835	Soybean	nucleus	34.2	34.03
Solyc01g008230.2.1	Tomato	nucleus	21.93	33.73
KRH70699	Soybean	nucleus	37.08	33.49
Solyc06g065190.1.1	Tomato	nucleus	27.94	32.92
Solyc04g009180.1.1	Tomato	nucleus	22.72	32.71
Solyc02g068200.1.1	Tomato	nucleus	22.19	31.25
Solyc09g008030.1.1	Tomato	plastid	16.19	30.85
Solyc11g020670.1.1	Tomato	nucleus	27.68	28.34
Solyc01g103780.2.1	Tomato	nucleus	29.24	25.17
Solyc03g006800.1.1	Tomato	nucleus	18.8	22.09
Solyc08g080150.1.1	Tomato	nucleus	20.1	20.81

Protein Annotations

MapMan:15.5.19	UniProt:G3BGW2	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EMBL:GQ496340
InterPro:IPR017887	PFAM:PF03634	PFscan:PS51369	PANTHER:PTHR31072	PANTHER:PTHR31072:SF70	EnsemblPlantsGene:Solyc05g007420.1
EnsemblPlants:Solyc05g007420.1.1	InterPro:TF_TCP_subgr	InterPro:Transcription_factor_TCP	UniParc:UPI00022A26B1	SEG:seg	:

Description

TCP transcription factor 23 [Source:UniProtKB/TrEMBL;Acc:G3BGW2]

Coordinates

chr5:-:1999465..2000616

Molecular Weight (calculated)

42717.8 Da

IEP (calculated)

7.048

GRAVY (calculated)

-1.039

Length

383 amino acids

Sequence
(BLAST)

001: METGHHHHDN IGNSIQRLNF PLQLLEKRDE VDHTTTICSS SLQLHPYNPT SLHMMTTSSS DAPCVNHNQK SKTHQDKKQQ PQQTKKPTTT KDRHTKVDGR
101: GRRIRMPATC AARVFQLTRE LGHKSDGETI EWLLQQAEPA VIAATGTGTI PANYSSLNIS LRSSRHHSAS NYLAHNHNNF GHVYHDRNYF NGVGLFSSEN
201: NSFFPSGNLN MLQAKEELCD DHDDNDNDND NNTGRIKRRS EDQDLLQNNY HMSNMLQSST YGSIPASHQI GQIPATTLYM MTNNNNNNNN NSSHHHDLNN
301: CSMWGSSSNN NDSIENSNIR GGILNFMNFH QPILGTRGDG GGTAAEGQWG MLTAAMNSYR QSGGHASGSS NQRNEGDDHQ HHS

Best Arabidopsis Sequence Match ( AT1G69690.1 )
(BLAST)

001: MDPDPDHNHR PNFPLQLLDS STSSSSTSLA IISTTSEPNS EPKKPPPKRT STKDRHTKVE GRGRRIRMPA MCAARVFQLT RELGHKSDGE TIEWLLQQAE
101: PAVIAATGTG TIPANFTSLN ISLRSSRSSL SAAHLRTTPS SYYFHSPHQS MTHHLQHQHQ VRPKNESHSS SSSSSQLLDH NQMGNYLVQS TAGSLPTSQS
201: PATAPFWSSG DNTQNLWAFN INPHHSGVVA GDVYNPNSGG SGGGSGVHLM NFAAPIALFS GQPLASGYGG GGGGGGEHSH YGVLAALNAA YRPVAETGNH
301: NNNQQNRDGD HHHNHQEDGS TSHHS

Arabidopsis Description

TCP15TCP15 [Source:UniProtKB/TrEMBL;Acc:A0A178WLV7]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.