Factsheet for Solyc08g006620.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 4
cytosol 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g081180.1.1
Solyc03g031830.1.1
Solyc03g096760.1.1
Solyc03g096770.1.1
Solyc03g096780.1.1
Solyc03g116320.2.1
Solyc04g077260.2.1
Solyc06g072990.1.1
Solyc09g065820.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G24860.1	Solyc03g116320.2.1	AT3G47620.1	21798944
AT2G24860.1	Solyc03g096760.1.1	AT3G49580.1	21798944
AT2G24860.1	Solyc03g096770.1.1	AT3G49580.1	21798944
AT2G24860.1	Solyc03g096780.1.1	AT3G49580.1	21798944
AT2G24860.1	Solyc06g072990.1.1	AT3G49580.1	21798944
AT2G24860.1	Solyc09g065820.2.1	AT4G02590.1	21798944
AT2G24860.1	Solyc02g081180.1.1	AT4G22250.1	21798944
AT2G24860.1	Solyc03g031830.1.1	AT4G22250.1	21798944
AT2G24860.1	Solyc04g077260.2.1	AT5G65790.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY36149	Canola	plastid	56.29	57.43
KRH15687	Soybean	plastid	46.36	56.91
CDY45605	Canola	plastid	55.63	56.76
Bra032056.1-P	Field mustard	plastid	54.97	56.08
VIT_04s0008g06970.t01	Wine grape	plastid	52.32	54.11
KRH61641	Soybean	plastid	49.67	53.96
AT2G24860.1	Thale cress	plastid	50.99	53.47
GSMUA_Achr6P01920_001	Banana	plastid	51.66	51.32
TraesCS5B01G220500.1	Wheat	plastid	47.68	48.65
TraesCS5D01G229500.1	Wheat	plastid	47.02	47.97
KXG35655	Sorghum	plastid	47.02	47.97
Os09t0423700-01	Rice	plastid	46.36	46.67
KRH52306	Soybean	plastid	49.67	45.45
KRH05342	Soybean	extracellular	49.01	41.81
TraesCS5A01G221700.1	Wheat	plastid	47.02	38.59
Zm00001d020538_P001	Maize	cytosol	37.09	36.84
HORVU5Hr1G064120.1	Barley	cytosol, nucleus	48.34	35.78

Protein Annotations

EnsemblPlants:Solyc08g006620.2.1	EnsemblPlantsGene:Solyc08g006620.2	InterPro:HSP_DnaJ_Cys-rich_dom_sf	PANTHER:PTHR15852	PANTHER:PTHR15852:SF13	SUPFAM:SSF57938
UniParc:UPI000276C04F	UniProt:K4CIF0	MapMan:35.2	:	:	:

Description

No Description!

Coordinates

chr8:+:1216067..1220196

Molecular Weight (calculated)

16535.1 Da

IEP (calculated)

8.554

GRAVY (calculated)

-0.095

Length

151 amino acids

Sequence
(BLAST)

001: MASCSCTCSN YRPIISAKKS DVVNRFLSQL MIYGDRRVKK IPRICVVRAS AVDSSSHFVE RIEKAWLISK QPRPIICSTC DSNGLVDCNW CGGTGFFILG
101: DNMLCQVPSR NTSCVICTGK GSVCCTDCKG TGHRAKWLGE PPIPKPPVTE E

Best Arabidopsis Sequence Match ( AT2G24860.1 )
(BLAST)

001: MTICMCCDSH LVAKSILNPW NSPRITKLGF VPVVRRFPAT TTVKASAVDS PESSSNFAKR MDQAWIISQQ PSPVGCSSCN SKGHVECKWC AGTGFFILGD
101: NMLCQVPSRN TSCVICSGQG SASCSDCKGT GFRAKWLEKP PVPT

Arabidopsis Description

At2g24860/F27C12.22 [Source:UniProtKB/TrEMBL;Acc:Q9SK46]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.