CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

nucleus 1
mitochondrion 3
extracellular 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG95612
KRH03466
KRH16959
KRH28317
KRH32094
KRH53667
KRH54542
KRH55381
KRH56919
KRH63357
KRH64261
KRH67287
KRH77168

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G24860.1	KRH03466	AT3G47620.1	21798944
AT2G24860.1	KRH54542	AT3G47620.1	21798944
AT2G24860.1	KRH56919	AT3G47620.1	21798944
AT2G24860.1	KRH63357	AT3G47620.1	21798944
AT2G24860.1	KRH16959	AT3G49580.1	21798944
AT2G24860.1	KRH53667	AT3G49580.1	21798944
AT2G24860.1	KRH64261	AT3G49580.1	21798944
AT2G24860.1	KRG95612	AT4G02590.1	21798944
AT2G24860.1	KRH32094	AT4G02590.1	21798944
AT2G24860.1	KRH55381	AT4G02590.1	21798944
AT2G24860.1	KRH67287	AT4G02590.1	21798944
AT2G24860.1	KRH28317	AT5G65790.1	21798944
AT2G24860.1	KRH77168	AT5G65790.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH15687	Soybean	plastid	55.93	80.49
KRH61641	Soybean	plastid	45.2	57.55
AT2G24860.1	Thale cress	plastid	46.33	56.94
Bra032056.1-P	Field mustard	plastid	46.33	55.41
CDY45605	Canola	plastid	46.33	55.41
CDY36149	Canola	plastid	46.33	55.41
VIT_04s0008g06970.t01	Wine grape	plastid	44.07	53.42
KRH52306	Soybean	plastid	48.02	51.52
KXG35655	Sorghum	plastid	42.37	50.68
GSMUA_Achr6P01920_001	Banana	plastid	42.37	49.34
Solyc08g006620.2.1	Tomato	cytosol	41.81	49.01
TraesCS5B01G220500.1	Wheat	plastid	40.68	48.65
TraesCS5D01G229500.1	Wheat	plastid	40.68	48.65
Os09t0423700-01	Rice	plastid	40.68	48.0
Zm00001d020538_P001	Maize	cytosol	33.9	39.47
TraesCS5A01G221700.1	Wheat	plastid	40.68	39.13
HORVU5Hr1G064120.1	Barley	cytosol, nucleus	40.11	34.8

Protein Annotations

EMBL:ACUP02010727	EnsemblPlants:KRH05342	EnsemblPlantsGene:GLYMA_17G221800	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0031072	GO:GO:0051082	InterPro:HSP_DnaJ_Cys-rich_dom_sf	PANTHER:PTHR15852	PANTHER:PTHR15852:SF13	ProteinID:KRH05342
ProteinID:KRH05342.1	SEG:seg	SUPFAM:SSF57938	UniParc:UPI0006EDE256	UniProt:A0A0R0FGW8	MapMan:35.2

Description

hypothetical protein

Coordinates

chr17:-:37424003..37426495

Molecular Weight (calculated)

19586.2 Da

IEP (calculated)

10.402

GRAVY (calculated)

-0.167

Length

177 amino acids

Sequence
(BLAST)

001: MKPKTTTRYF IIQVKKHETF LVLLLSISVK KKKKKSCGKG FVHILNAMHS VRFMSSPIGV TVTVPNNARP CNRISCIRVK ASMVDSSSDF VKRMELAWSI
101: SQQPMPIACT SCNSKGHTEC KWCGGTGFFI IGDNVLCEVP SRNTSCVVCR GKGSRCCSDC QGTGFRAKWL KEPPTSK

Best Arabidopsis Sequence Match ( AT2G24860.1 )
(BLAST)

001: MTICMCCDSH LVAKSILNPW NSPRITKLGF VPVVRRFPAT TTVKASAVDS PESSSNFAKR MDQAWIISQQ PSPVGCSSCN SKGHVECKWC AGTGFFILGD
101: NMLCQVPSRN TSCVICSGQG SASCSDCKGT GFRAKWLEKP PVPT

Arabidopsis Description

At2g24860/F27C12.22 [Source:UniProtKB/TrEMBL;Acc:Q9SK46]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.