Subcellular Localization
min:
: max
Winner_takes_all: nucleus, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU1Hr1G022130.3 | |
| HORVU5Hr1G106310.3 | |
| HORVU6Hr1G075650.1 | |
| HORVU7Hr1G038130.1 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G229500.1 | Wheat | plastid | 69.61 | 95.95 |
| TraesCS5B01G220500.1 | Wheat | plastid | 68.63 | 94.59 |
| Os09t0423700-01 | Rice | plastid | 55.39 | 75.33 |
| TraesCS5A01G221700.1 | Wheat | plastid | 67.65 | 75.0 |
| KXG35655 | Sorghum | plastid | 48.53 | 66.89 |
| KRH15687 | Soybean | plastid | 34.31 | 56.91 |
| CDY36149 | Canola | plastid | 40.2 | 55.41 |
| AT2G24860.1 | Thale cress | plastid | 38.73 | 54.86 |
| Bra032056.1-P | Field mustard | plastid | 39.71 | 54.73 |
| CDY45605 | Canola | plastid | 39.71 | 54.73 |
| VIT_04s0008g06970.t01 | Wine grape | plastid | 38.73 | 54.11 |
| GSMUA_Achr6P01920_001 | Banana | plastid | 40.2 | 53.95 |
| KRH61641 | Soybean | plastid | 35.78 | 52.52 |
| Solyc08g006620.2.1 | Tomato | cytosol | 35.78 | 48.34 |
| Zm00001d020538_P001 | Maize | cytosol | 35.78 | 48.03 |
| KRH52306 | Soybean | plastid | 35.78 | 44.24 |
| KRH05342 | Soybean | extracellular | 34.8 | 40.11 |
Protein Annotations
| EnsemblPlants:HORVU5Hr1G064120.1 | EnsemblPlantsGene:HORVU5Hr1G064120 | InterPro:HSP_DnaJ_Cys-rich_dom_sf | PANTHER:PTHR15852 | PANTHER:PTHR15852:SF13 | SEG:seg |
| SUPFAM:SSF57938 | UniParc:UPI000B478041 | UniProt:A0A287RIV9 | MapMan:35.2 | : | : |
Description
No Description!
Coordinates
chrchr5H:+:495377666..495383801
Molecular Weight (calculated)
21610.5 Da
IEP (calculated)
8.800
GRAVY (calculated)
-0.460
Length
204 amino acids
Sequence
(BLAST)
(BLAST)
001: ATRDWPDGRL SHLSAAEQRT FHTGDSARGL QEDHGSSSLR SLASQPLSGD SKPLPMPAIA CGACAAAFPS SSAHARSPPP PSGGFRRLVS PTPGRLGHRL
101: AAPMASTVDS PGSSSDFAKR MDRAWLISKQ PRPTSCSSCQ STGDVECRWC AGTGFFILGN NMLCEVPSKN TRCVICSGKG FSRCTDCKGT GFRAKWLEEP
201: PVDK
101: AAPMASTVDS PGSSSDFAKR MDRAWLISKQ PRPTSCSSCQ STGDVECRWC AGTGFFILGN NMLCEVPSKN TRCVICSGKG FSRCTDCKGT GFRAKWLEEP
201: PVDK
001: MTICMCCDSH LVAKSILNPW NSPRITKLGF VPVVRRFPAT TTVKASAVDS PESSSNFAKR MDQAWIISQQ PSPVGCSSCN SKGHVECKWC AGTGFFILGD
101: NMLCQVPSRN TSCVICSGQG SASCSDCKGT GFRAKWLEKP PVPT
101: NMLCQVPSRN TSCVICSGQG SASCSDCKGT GFRAKWLEKP PVPT
Arabidopsis Description
At2g24860/F27C12.22 [Source:UniProtKB/TrEMBL;Acc:Q9SK46]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.