Factsheet for GSMUA_Achr6P01920_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
golgi 1
plastid 6
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	secretory
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	plasma membrane
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr1P18240_001
GSMUA_Achr2P02250_001
GSMUA_Achr3P12970_001
GSMUA_Achr4P00500_001
GSMUA_Achr4P21070_001
GSMUA_Achr4P28090_001
GSMUA_Achr4P32240_001
GSMUA_Achr5P01930_001
GSMUA_Achr5P03100_001
GSMUA_Achr5P21840_001
GSMUA_Achr5P27050_001
GSMUA_Achr6P01850_001
GSMUA_Achr6P02720_001
GSMUA_Achr6P31740_001
GSMUA_Achr7P08150_001
GSMUA_Achr7P17990_001
GSMUA_Achr7P20990_001
GSMUA_Achr8P06630_001
GSMUA_Achr9P25560_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G24860.1	GSMUA_Achr2P02250_001	AT2G47700.1	21798944
AT2G24860.1	GSMUA_Achr5P27050_001	AT2G47700.1	21798944
AT2G24860.1	GSMUA_Achr8P06630_001	AT2G47700.1	21798944
AT2G24860.1	GSMUA_Achr4P00500_001	AT3G47620.1	21798944
AT2G24860.1	GSMUA_Achr6P02720_001	AT3G47620.1	21798944
AT2G24860.1	GSMUA_Achr7P17990_001	AT3G47620.1	21798944
AT2G24860.1	GSMUA_Achr7P20990_001	AT3G47620.1	21798944
AT2G24860.1	GSMUA_Achr4P21070_001	AT4G02590.1	21798944
AT2G24860.1	GSMUA_Achr5P03100_001	AT4G02590.1	21798944
AT2G24860.1	GSMUA_Achr9P25560_001	AT4G02590.1	21798944
AT2G24860.1	GSMUA_Achr1P18240_001	AT4G22250.1	21798944
AT2G24860.1	GSMUA_Achr3P12970_001	AT4G22250.1	21798944
AT2G24860.1	GSMUA_Achr10P...	AT5G65790.1	21798944
AT2G24860.1	GSMUA_Achr4P28090_001	AT5G65790.1	21798944
AT2G24860.1	GSMUA_Achr4P32240_001	AT5G65790.1	21798944
AT2G24860.1	GSMUA_Achr5P01930_001	AT5G65790.1	21798944
AT2G24860.1	GSMUA_Achr5P21840_001	AT5G65790.1	21798944
AT2G24860.1	GSMUA_Achr6P01850_001	AT5G65790.1	21798944
AT2G24860.1	GSMUA_Achr6P31740_001	AT5G65790.1	21798944
AT2G24860.1	GSMUA_Achr7P08150_001	AT5G65790.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra032056.1-P	Field mustard	plastid	62.5	64.19
CDY45605	Canola	plastid	61.84	63.51
CDY36149	Canola	plastid	61.18	62.84
AT2G24860.1	Thale cress	plastid	58.55	61.81
KRH15687	Soybean	plastid	48.68	60.16
Os09t0423700-01	Rice	plastid	57.89	58.67
KRH61641	Soybean	plastid	52.63	57.55
KXG35655	Sorghum	plastid	55.26	56.76
TraesCS5B01G220500.1	Wheat	plastid	54.61	56.08
TraesCS5D01G229500.1	Wheat	plastid	54.61	56.08
VIT_04s0008g06970.t01	Wine grape	plastid	53.29	55.48
Solyc08g006620.2.1	Tomato	cytosol	51.32	51.66
KRH52306	Soybean	plastid	51.97	47.88
TraesCS5A01G221700.1	Wheat	plastid	55.26	45.65
KRH05342	Soybean	extracellular	49.34	42.37
HORVU5Hr1G064120.1	Barley	cytosol, nucleus	53.95	40.2
Zm00001d020538_P001	Maize	cytosol	39.47	39.47

Protein Annotations

EnsemblPlants:GSMUA_Achr6P01920_001	EnsemblPlants:GSMUA_Achr6T01920_001	EnsemblPlantsGene:GSMUA_Achr6G01920_001	InterPro:HSP_DnaJ_Cys-rich_dom_sf	PANTHER:PTHR15852	PANTHER:PTHR15852:SF13
SEG:seg	SUPFAM:SSF57938	UniParc:UPI000295D020	UniProt:M0T3E0	MapMan:35.2	:

Description

Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr6G01920_001]

Coordinates

chr6:-:1241087..1245087

Molecular Weight (calculated)

15941.3 Da

IEP (calculated)

8.569

GRAVY (calculated)

0.010

Length

152 amino acids

Sequence
(BLAST)

001: MPITCCSLCG PLPSVLTNPL LPPRSLGGWS GSSVAAAPSG RLRKVPALLV RASVVDSSES SSSFAKRMER AWLISQQPTP IACSSCGSNG SVECKWCAGT
101: GFFILGNKML CEVPSRNTTC VICMGKGSAS CPDCKGTGFR AKWLEEPRPP SE

Best Arabidopsis Sequence Match ( AT2G24860.1 )
(BLAST)

001: MTICMCCDSH LVAKSILNPW NSPRITKLGF VPVVRRFPAT TTVKASAVDS PESSSNFAKR MDQAWIISQQ PSPVGCSSCN SKGHVECKWC AGTGFFILGD
101: NMLCQVPSRN TSCVICSGQG SASCSDCKGT GFRAKWLEKP PVPT

Arabidopsis Description

At2g24860/F27C12.22 [Source:UniProtKB/TrEMBL;Acc:Q9SK46]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.