CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 6
cytosol 1
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	secretory
ChloroP:	plastid
EpiLoc:	cytosol
iPSORT:	mitochondrion
MultiLoc:	plastid
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG95612
KRH03466
KRH16959
KRH28317
KRH32094
KRH53667
KRH54542
KRH55381
KRH56919
KRH63357
KRH64261
KRH67287
KRH77168

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G24860.1	KRH03466	AT3G47620.1	21798944
AT2G24860.1	KRH54542	AT3G47620.1	21798944
AT2G24860.1	KRH56919	AT3G47620.1	21798944
AT2G24860.1	KRH63357	AT3G47620.1	21798944
AT2G24860.1	KRH16959	AT3G49580.1	21798944
AT2G24860.1	KRH53667	AT3G49580.1	21798944
AT2G24860.1	KRH64261	AT3G49580.1	21798944
AT2G24860.1	KRG95612	AT4G02590.1	21798944
AT2G24860.1	KRH32094	AT4G02590.1	21798944
AT2G24860.1	KRH55381	AT4G02590.1	21798944
AT2G24860.1	KRH67287	AT4G02590.1	21798944
AT2G24860.1	KRH28317	AT5G65790.1	21798944
AT2G24860.1	KRH77168	AT5G65790.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH52306	Soybean	plastid	86.33	72.73
KRH15687	Soybean	plastid	56.12	63.41
CDY36149	Canola	plastid	57.55	54.05
VIT_04s0008g06970.t01	Wine grape	plastid	56.12	53.42
Bra032056.1-P	Field mustard	plastid	56.83	53.38
CDY45605	Canola	plastid	56.83	53.38
AT2G24860.1	Thale cress	plastid	54.68	52.78
GSMUA_Achr6P01920_001	Banana	plastid	57.55	52.63
KXG35655	Sorghum	plastid	54.68	51.35
TraesCS5B01G220500.1	Wheat	plastid	53.24	50.0
TraesCS5D01G229500.1	Wheat	plastid	53.24	50.0
Solyc08g006620.2.1	Tomato	cytosol	53.96	49.67
Os09t0423700-01	Rice	plastid	53.24	49.33
KRH05342	Soybean	extracellular	57.55	45.2
TraesCS5A01G221700.1	Wheat	plastid	53.24	40.22
Zm00001d020538_P001	Maize	cytosol	43.88	40.13
HORVU5Hr1G064120.1	Barley	cytosol, nucleus	52.52	35.78

Protein Annotations

EMBL:ACUP02002179	EnsemblPlants:KRH61641	EnsemblPlantsGene:GLYMA_04G059900	EntrezGene:100810900	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0031072	GO:GO:0051082	InterPro:HSP_DnaJ_Cys-rich_dom_sf	PANTHER:PTHR15852	PANTHER:PTHR15852:SF13
ProteinID:KRH61641	ProteinID:KRH61641.1	SUPFAM:SSF57938	UniParc:UPI0002339642	UniProt:I1JU52	MapMan:35.2

Description

hypothetical protein

Coordinates

chr4:-:4902800..4904917

Molecular Weight (calculated)

15091.4 Da

IEP (calculated)

8.505

GRAVY (calculated)

-0.027

Length

139 amino acids

Sequence
(BLAST)

001: MSRCVSCALI PNKNFLVSPI QIPIHNAVKV RGNNRTCGLR VQLSMVDSSS ADFTRRIERA WLISKQPGPI VCSSCDSKGH IECKWCAGTG FFILGDNMLC
101: EVPSRNTTCI ICTGKGSMCC SDCQGTGFRA KWLGEPPSS

Best Arabidopsis Sequence Match ( AT2G24860.1 )
(BLAST)

001: MTICMCCDSH LVAKSILNPW NSPRITKLGF VPVVRRFPAT TTVKASAVDS PESSSNFAKR MDQAWIISQQ PSPVGCSSCN SKGHVECKWC AGTGFFILGD
101: NMLCQVPSRN TSCVICSGQG SASCSDCKGT GFRAKWLEKP PVPT

Arabidopsis Description

At2g24860/F27C12.22 [Source:UniProtKB/TrEMBL;Acc:Q9SK46]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.