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Wine grape
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Wine grape
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 9
  • plasma membrane 1
  • nucleus 1
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:nucleus, plasma membrane, plastid
BaCelLo:plastid
ChloroP:plastid
iPSORT:plastid
MultiLoc:plastid
Plant-mPloc:nucleus, plasma membrane
Predotar:plastid
PProwler:plastid
TargetP:plastid
WoLF PSORT:plastid
YLoc:plastid
PPI

Inferred distinct locusB in Crop

locusBlocations
VIT_07s0005g00420.t01
VIT_07s0141g00220.t01
VIT_16s0098g00600.t01
VIT_17s0000g06020.t01

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT2G24860.1 VIT_07s0005g00420.t01 AT2G47700.1 21798944
AT2G24860.1 VIT_17s0000g06020.t01 AT3G47620.1 21798944
AT2G24860.1 VIT_16s0098g00600.t01 AT3G49580.1 21798944
AT2G24860.1 VIT_07s0141g00220.t01 AT4G02590.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRH15687 Soybean plastid 55.48 65.85
Bra032056.1-P Field mustard plastid 65.07 64.19
CDY45605 Canola plastid 65.07 64.19
CDY36149 Canola plastid 63.7 62.84
AT2G24860.1 Thale cress plastid 59.59 60.42
KRH61641 Soybean plastid 53.42 56.12
TraesCS5D01G229500.1 Wheat plastid 54.79 54.05
TraesCS5B01G220500.1 Wheat plastid 54.11 53.38
GSMUA_Achr6P01920_001 Banana plastid 55.48 53.29
Os09t0423700-01 Rice plastid 54.11 52.67
Solyc08g006620.2.1 Tomato cytosol 54.11 52.32
KXG35655 Sorghum plastid 52.74 52.03
KRH52306 Soybean plastid 56.16 49.7
KRH05342 Soybean extracellular 53.42 44.07
TraesCS5A01G221700.1 Wheat plastid 54.79 43.48
Zm00001d020538_P001 Maize cytosol 41.1 39.47
HORVU5Hr1G064120.1 Barley cytosol, nucleus 54.11 38.73
Protein Annotations
ArrayExpress:VIT_04s0008g06970EMBL:FN595231EnsemblPlants:VIT_04s0008g06970.t01EnsemblPlantsGene:VIT_04s0008g06970EntrezGene:100242360EntrezGene:LOC100242360
InterPro:HSP_DnaJ_Cys-rich_dom_sfPANTHER:PTHR15852PANTHER:PTHR15852:SF13ProteinID:CCB46884ProteinID:CCB46884.1RefSeq:XP_002285576
RefSeq:XP_002285576.1SEG:segSUPFAM:SSF57938TIGR:TC61139unigene:Vvi.1849UniParc:UPI00015C8D96
UniProt:F6H355wikigene:100242360wikigene:LOC100242360MapMan:35.2::
Description
No Description!
Coordinates
chr4:+:6999701..7004025
Molecular Weight (calculated)
15495.7 Da
IEP (calculated)
8.621
GRAVY (calculated)
-0.104
Length
146 amino acids
Sequence
(BLAST)
001: MSTCVCCSTP AILGKSKEGV SNGVVLKPPG SISSSRSMNS RVFGVRASMV DSYESSSNFA KRMEQAWLIS QQPRPVSCTS CETKGHVECK WCGGTGFFIL
101: GNNMLCQVPS RNTSCVICAG KGSTCCSDCK GTGFRAMWLG EPPVSK
Best Arabidopsis Sequence Match ( AT2G24860.1 )
(BLAST)
001: MTICMCCDSH LVAKSILNPW NSPRITKLGF VPVVRRFPAT TTVKASAVDS PESSSNFAKR MDQAWIISQQ PSPVGCSSCN SKGHVECKWC AGTGFFILGD
101: NMLCQVPSRN TSCVICSGQG SASCSDCKGT GFRAKWLEKP PVPT
Arabidopsis Description
At2g24860/F27C12.22 [Source:UniProtKB/TrEMBL;Acc:Q9SK46]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.