Factsheet for GSMUA_Achr6P01850_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr1P07930_001
GSMUA_Achr1P16220_001
GSMUA_Achr2P03310_001
GSMUA_Achr6P01920_001
GSMUA_Achr7P05870_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G49690.1	GSMUA_Achr6P01920_001	AT2G24860.1	21798944
AT3G49690.1	GSMUA_Achr10P...	AT5G62090.1	21798944
AT3G49690.1	GSMUA_Achr1P07930_001	AT5G62090.1	21798944
AT3G49690.1	GSMUA_Achr1P16220_001	AT5G62090.1	21798944
AT3G49690.1	GSMUA_Achr2P03310_001	AT5G62090.1	21798944
AT3G49690.1	GSMUA_Achr7P05870_001	AT5G62090.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY08749	Canola	nucleus	12.61	82.35
GSMUA_Achr5P09280_001	Banana	nucleus	31.53	54.69
GSMUA_Achr5P21840_001	Banana	nucleus	31.53	50.72
GSMUA_Achr4P28090_001	Banana	nucleus	33.03	48.67
GSMUA_Achr4P01050_001	Banana	nucleus	31.83	46.9
GSMUA_Achr1P03140_001	Banana	nucleus	33.93	44.49
GSMUA_Achr8P24780_001	Banana	nucleus	40.54	43.97
GSMUA_Achr5P22760_001	Banana	nucleus	41.44	43.67
GSMUA_Achr10P...	Banana	nucleus	35.14	43.66
GSMUA_Achr11P...	Banana	nucleus	33.93	43.3
GSMUA_Achr6P30830_001	Banana	nucleus	40.54	42.86
GSMUA_Achr1P04910_001	Banana	nucleus	31.23	42.8
GSMUA_Achr9P09790_001	Banana	nucleus	33.63	42.59
GSMUA_Achr7P08150_001	Banana	nucleus	32.13	41.8
GSMUA_Achr7P19530_001	Banana	nucleus	42.34	41.35
GSMUA_Achr5P01930_001	Banana	nucleus	34.83	41.28
GSMUA_Achr4P32240_001	Banana	nucleus	34.23	40.86
GSMUA_Achr5P10690_001	Banana	nucleus	33.93	40.5
GSMUA_AchrUn_...	Banana	nucleus	33.03	40.29
GSMUA_Achr4P25260_001	Banana	nucleus	33.63	40.14
HORVU5Hr1G098540.1	Barley	nucleus	36.04	38.59
TraesCS5A01G405800.1	Wheat	nucleus	36.04	38.59
TraesCS5B01G410500.1	Wheat	nucleus	36.04	38.59
TraesCS5D01G415800.1	Wheat	nucleus	36.04	38.59
Os03t0771100-01	Rice	nucleus	36.94	38.32
GSMUA_Achr6P31740_001	Banana	nucleus	38.44	38.21
GSMUA_Achr2P04200_001	Banana	nucleus	34.23	37.87
AT3G49690.1	Thale cress	nucleus	35.14	37.74
GSMUA_Achr9P13610_001	Banana	nucleus	35.14	37.74
GSMUA_Achr7P25060_001	Banana	nucleus	33.03	37.67
CDY08162	Canola	nucleus	33.93	37.67
EER90818	Sorghum	nucleus	36.94	37.61
CDY60980	Canola	nucleus	35.44	37.58
CDY18676	Canola	nucleus	35.44	37.58
Bra017963.1-P	Field mustard	nucleus	33.63	37.33
Zm00001d034207_P001	Maize	nucleus	35.14	37.26
CDY65680	Canola	nucleus	33.33	37.0
Bra037828.1-P	Field mustard	nucleus	34.53	36.62
KRH77168	Soybean	nucleus	38.14	36.6
KRH28317	Soybean	nucleus	38.14	36.49
PGSC0003DMT400012702	Potato	nucleus	35.74	36.17
GSMUA_Achr8P14190_001	Banana	nucleus	33.93	36.1
Solyc04g077260.2.1	Tomato	nucleus	35.14	36.0
Zm00001d013164_P002	Maize	nucleus	37.24	35.43
CDY52538	Canola	nucleus	37.24	33.6
CDY45629	Canola	nucleus	36.94	33.42
CDY37840	Canola	nucleus	37.24	33.42
Bra031847.1-P	Field mustard	nucleus	37.24	33.42
CDY08748	Canola	nucleus	36.64	33.15
Bra024419.1-P	Field mustard	nucleus	36.64	33.15
AT5G65790.1	Thale cress	nucleus	36.94	32.89
GSMUA_Achr3P10060_001	Banana	nucleus	28.83	30.0

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
EnsemblPlantsGene:GSMUA_Achr6G01850_001	EnsemblPlants:GSMUA_Achr6P01850_001	EnsemblPlants:GSMUA_Achr6T01850_001	InterPro:Homeobox-like_sf	InterPro:IPR017930	UniProt:M0T3D3
InterPro:Myb_dom	PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR10641	PANTHER:PTHR10641:SF946	InterPro:SANT/Myb
SMART:SM00717	SUPFAM:SSF46689	UniParc:UPI000295FB69	:	:	:

Description

MYB family transcription factor, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr6G01850_001]

Coordinates

chr6:+:1204556..1206131

Molecular Weight (calculated)

37626.2 Da

IEP (calculated)

6.981

GRAVY (calculated)

-0.711

Length

333 amino acids

Sequence
(BLAST)

001: MGRAPCCDKT NVKKGPWSPE EDAKLKDYIE EHGTGGNWIA LPNKIGLKRC GKSCRLRWLN YLRPNIKHGG FTEEEDQTIC RLYISIGSRW SIIAAQLPGR
101: TDNDIKNYWN TRLKKKLLGK QREPNRSRSL HLNHVPGDAA DRLKHEAPSQ TLSASALERM QLHMQLQGLH NPFSFYNHPE LWPKYYHPLG DKIFQSQTTD
201: ATATTPVQQA PDVSKLMSTN IQETDCLPLG FRSPSSGGTL SMETSSSNLD SATAGVRADL HDLLYCKNSS TVGHEEHQLV DLDCYKEIYG ETESTNWWPT
301: EGFMDQTATV SWDSASALHS EFMWQENGLR FGL

Best Arabidopsis Sequence Match ( AT5G57620.1 )
(BLAST)

001: MGRAPCCDKA NVKKGPWSPE EDVKLKDYID KYGTGGNWIA LPQKIGLKRC GKSCRLRWLN YLRPNIKHGG FSEEEDRIIL SLYISIGSRW SIIAAQLPGR
101: TDNDIKNYWN TKLKKKLLGR QKQMNRQDSI TDSTENNLSN NNNNKSPQNL SNSALERLQL HMQLQNLQSP FSSFYNNPIL WPKLHPLLQS TTTNQNPKLA
201: SQESFHPLGV NVDHQHNNTK LAQINNGASS LYSENVEQSQ NPAHEFQPNF GFSQDLRLDN HNMDFMNRGV SKELFQVGNE FELTNGSSWW SEEVELERKT
301: TSSSSWGSAS VLDQTTEGMV MLQDYAQMSY HSV

Arabidopsis Description

MYB36Transcription factor MYB36 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKL2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.