Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY45629 | Canola | nucleus | 97.28 | 97.28 |
| CDY08749 | Canola | nucleus | 12.23 | 88.24 |
| CDY52538 | Canola | nucleus | 87.23 | 86.99 |
| AT5G65790.1 | Thale cress | nucleus | 88.04 | 86.63 |
| Bra031847.1-P | Field mustard | nucleus | 86.41 | 85.71 |
| CDY37840 | Canola | nucleus | 86.14 | 85.44 |
| CDY18676 | Canola | nucleus | 72.83 | 85.35 |
| CDY60980 | Canola | nucleus | 72.01 | 84.39 |
| CDY08162 | Canola | nucleus | 56.79 | 69.67 |
| CDY65680 | Canola | nucleus | 56.52 | 69.33 |
| GSMUA_Achr4P28090_001 | Banana | nucleus | 32.07 | 52.21 |
| GSMUA_Achr5P21840_001 | Banana | nucleus | 28.8 | 51.21 |
| GSMUA_Achr10P... | Banana | nucleus | 32.07 | 44.03 |
| KRH28317 | Soybean | nucleus | 39.67 | 41.95 |
| GSMUA_Achr7P08150_001 | Banana | nucleus | 29.08 | 41.8 |
| KRH77168 | Soybean | nucleus | 39.4 | 41.79 |
| GSMUA_Achr5P01930_001 | Banana | nucleus | 31.79 | 41.64 |
| CDY33205 | Canola | nucleus | 31.52 | 40.28 |
| CDX75005 | Canola | nucleus | 31.52 | 40.28 |
| CDY46743 | Canola | nucleus | 31.25 | 39.79 |
| CDX79698 | Canola | nucleus | 31.25 | 39.79 |
| Solyc04g077260.2.1 | Tomato | nucleus | 35.05 | 39.69 |
| PGSC0003DMT400012702 | Potato | nucleus | 35.33 | 39.51 |
| GSMUA_Achr4P32240_001 | Banana | nucleus | 29.89 | 39.43 |
| CDX69328 | Canola | nucleus | 32.61 | 39.34 |
| CDY11860 | Canola | nucleus | 33.7 | 37.13 |
| CDX88631 | Canola | nucleus | 33.15 | 36.86 |
| CDY25898 | Canola | nucleus | 32.34 | 36.73 |
| GSMUA_Achr6P01850_001 | Banana | nucleus | 33.15 | 36.64 |
| GSMUA_Achr6P31740_001 | Banana | nucleus | 32.88 | 36.12 |
| CDY64987 | Canola | nucleus | 22.01 | 33.89 |
| CDY09184 | Canola | nucleus | 28.26 | 31.61 |
| CDY50326 | Canola | nucleus | 28.53 | 31.44 |
| CDY26977 | Canola | nucleus | 28.26 | 30.59 |
| CDY17391 | Canola | nucleus | 23.37 | 26.88 |
| CDY57424 | Canola | nucleus | 22.83 | 26.25 |
| CDX86430 | Canola | nucleus | 22.83 | 26.01 |
| CDX85201 | Canola | endoplasmic reticulum, vacuole | 22.83 | 12.84 |
| CDY40299 | Canola | nucleus | 2.72 | 5.0 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.2.1 | GO:A0A078FAC6 | UniProt:A0A078FAC6 | EnsemblPlants:CDY08748 | ProteinID:CDY08748 |
| ProteinID:CDY08748.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | EnsemblPlantsGene:GSBRNA2T00000678001 |
| InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | PFAM:PF00249 | PFscan:PS51294 | PANTHER:PTHR10641 |
| PANTHER:PTHR10641:SF654 | InterPro:SANT/Myb | SMART:SM00717 | SUPFAM:SSF46689 | UniParc:UPI0004EF14DA | SEG:seg |
Description
BnaA06g24760DBnaA06g24760D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FAC6]
Coordinates
chrLK031989:-:163172..164484
Molecular Weight (calculated)
41449.4 Da
IEP (calculated)
5.841
GRAVY (calculated)
-0.732
Length
368 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRAPCCDKA NVKKGPWSPE EDAKLKDYIE SSGTGGNWIA LPQKIGLRRC GKSCRLRWLN YLRPNIKHGG FSEEEDNIIC NLYVTIGSRW SIIAAQLPGR
101: TDNDIKNYWN TRLKKKLLNK QRKEYQEARM KQDMVMIKRQ EQGQGQSNAS RDLYSNNMFG SSPWPLLPQL PSPHHQVPLV MMEPTSCNYY QMTPSCNFEQ
201: KPLITLKNMV KTEEEPERTN PDHHHPEYSI TNPFDFSFSQ LLLDPNYYLE PVGGEGELAI TSSSTNSPLP NTSADHHQQQ QEILQWFGSS NFQTEAVNDM
301: FLSNNDIANL ETNENTKFYG NLPVAGAAAA LAGGTTSTSA DQSTISWEDI TSLVNSDDAS YFNGANHL
101: TDNDIKNYWN TRLKKKLLNK QRKEYQEARM KQDMVMIKRQ EQGQGQSNAS RDLYSNNMFG SSPWPLLPQL PSPHHQVPLV MMEPTSCNYY QMTPSCNFEQ
201: KPLITLKNMV KTEEEPERTN PDHHHPEYSI TNPFDFSFSQ LLLDPNYYLE PVGGEGELAI TSSSTNSPLP NTSADHHQQQ QEILQWFGSS NFQTEAVNDM
301: FLSNNDIANL ETNENTKFYG NLPVAGAAAA LAGGTTSTSA DQSTISWEDI TSLVNSDDAS YFNGANHL
001: MGRAPCCDKA NVKKGPWSPE EDAKLKDYIE NSGTGGNWIA LPQKIGLRRC GKSCRLRWLN YLRPNIKHGG FSEEEDNIIC NLYVTIGSRW SIIAAQLPGR
101: TDNDIKNYWN TRLKKKLLNK QRKEFQEARM KQEMVMMKRQ QQGQGQGQSN GSTDLYLNNM FGSSPWPLLP QLPPPHHQIP LGMMEPTSCN YYQTTPSCNL
201: EQKPLITLKN MVKIEEEQER TNPDHHHQDS VTNPFDFSFS QLLLDPNYYL GSGGGGEGDF AIMSSSTNSP LPNTSSDQHP SQQQEILQWF GSSNFQTEAI
301: NDMFINNNNN IVNLETIENT KVYGDASVAG AAVRAALGGG TTSTSADQST ISWEDITSLV NSEDASYFNA PNHV
101: TDNDIKNYWN TRLKKKLLNK QRKEFQEARM KQEMVMMKRQ QQGQGQGQSN GSTDLYLNNM FGSSPWPLLP QLPPPHHQIP LGMMEPTSCN YYQTTPSCNL
201: EQKPLITLKN MVKIEEEQER TNPDHHHQDS VTNPFDFSFS QLLLDPNYYL GSGGGGEGDF AIMSSSTNSP LPNTSSDQHP SQQQEILQWF GSSNFQTEAI
301: NDMFINNNNN IVNLETIENT KVYGDASVAG AAVRAALGGG TTSTSADQST ISWEDITSLV NSEDASYFNA PNHV
Arabidopsis Description
ATMYB68At5g65790 [Source:UniProtKB/TrEMBL;Acc:O49538]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.