CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra020228.1-P	Field mustard	nucleus	100.0	100.0
CDY40299	Canola	nucleus	60.79	100.0
CDY50326	Canola	nucleus	85.71	84.43
AT5G23000.1	Thale cress	nucleus	83.59	83.59
CDY26977	Canola	nucleus	84.19	81.47
CDY08749	Canola	nucleus	9.73	62.75
CDY33205	Canola	nucleus	32.52	37.15
CDX79698	Canola	nucleus	32.52	37.02
CDX75005	Canola	nucleus	32.22	36.81
CDY46743	Canola	nucleus	31.91	36.33
CDY64987	Canola	nucleus	24.92	34.31
CDY25898	Canola	nucleus	33.43	33.95
CDY08162	Canola	nucleus	30.7	33.67
CDX88631	Canola	nucleus	33.74	33.53
CDY11860	Canola	nucleus	33.74	33.23
CDY18676	Canola	nucleus	30.7	32.17
CDY65680	Canola	nucleus	29.18	32.0
CDY60980	Canola	nucleus	30.4	31.85
CDX69328	Canola	nucleus	29.18	31.48
CDY52538	Canola	nucleus	31.91	28.46
CDY37840	Canola	nucleus	31.91	28.3
CDY08748	Canola	nucleus	31.61	28.26
CDY45629	Canola	nucleus	31.61	28.26
CDY17391	Canola	nucleus	25.53	26.25
CDY57424	Canola	nucleus	25.23	25.94
CDX86430	Canola	nucleus	25.23	25.7
CDX85201	Canola	endoplasmic reticulum, vacuole	24.92	12.54

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.1	GO:A0A078F826	UniProt:A0A078F826	EnsemblPlants:CDY09184	ProteinID:CDY09184
ProteinID:CDY09184.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	EnsemblPlantsGene:GSBRNA2T00001418001
InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom	PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR10641
PANTHER:PTHR10641:SF928	InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689	UniParc:UPI0002543514	SEG:seg

Description

BnaA02g06100DBnaA02g06100D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F826]

Coordinates

chrLK031993:+:522751..524076

Molecular Weight (calculated)

36744.9 Da

IEP (calculated)

8.734

GRAVY (calculated)

-0.689

Length

329 amino acids

Sequence
(BLAST)

001: MGRAPCCDKT KVKRGPWSPE EDSKLRGYIE KYGNGGNWIS FPLKAGLRRC GKSCRLRWLN YLRPNIKHGD FSEEEDRIIF SLFAAIGSRW SIIAAHLPGR
101: TDNDIKNYWN TKLRKKLMSS SSFSHSSSAM TSPFLNPNSQ DVKRPSTTIS PSSYNPYFEN PTKALISNID GFEADNHQIF PFVNPNYPQD ISLSESSNNN
201: ISGTSGFSLN HNMCGHYSNH NHFSSDVSGN RSEIIMKQEE IMMLMMIDNH IDQRTKGYNG DFTQGYYSNF INGHGDLKQM ISGTGTNSNI NMGGSGSESA
301: SSSSSISNLA ENKSSGSLLQ HKCLPYFYS

Best Arabidopsis Sequence Match ( AT5G23000.1 )
(BLAST)

001: MGRAPCCDKT KVKRGPWSPE EDSKLRDYIE KYGNGGNWIS FPLKAGLRRC GKSCRLRWLN YLRPNIKHGD FSEEEDRIIF SLFAAIGSRW SIIAAHLPGR
101: TDNDIKNYWN TKLRKKLLSS SSDSSSSAMA SPYLNPISQD VKRPTSPTTI PSSSYNPYAE NPNQYPTKSL ISSINGFEAG DKQIISYINP NYPQDLYLSD
201: SNNNTSNANG FLLNHNMCDQ YKNHTSFSSD VNGIRSEIMM KQEEIMMMMM IDHHIDQRTK GYNGEFTQGY YNYYNGHGDL KQMISGTGTN SNINMGGSGS
301: SSSSISNLAE NKSSGSLLLE YKCLPYFYS

Arabidopsis Description

RAX1Transcription factor RAX1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FG68]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.