CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra011785.1-P	Field mustard	nucleus	94.75	94.75
AT4G37780.1	Thale cress	nucleus	76.72	76.72
CDY08749	Canola	nucleus	12.46	74.51
Zm00001d034207_P001	Maize	nucleus	39.67	38.53
CDY65680	Canola	nucleus	37.7	38.33
CDY08162	Canola	nucleus	37.7	38.33
TraesCS5D01G415800.1	Wheat	nucleus	39.02	38.26
TraesCS5B01G410500.1	Wheat	nucleus	39.02	38.26
TraesCS5A01G405800.1	Wheat	nucleus	39.02	38.26
Os03t0771100-01	Rice	nucleus	40.0	38.01
HORVU5Hr1G098540.1	Barley	nucleus	38.69	37.94
EER90818	Sorghum	nucleus	40.33	37.61
CDY33205	Canola	nucleus	35.41	37.5
CDX75005	Canola	nucleus	34.43	36.46
CDY46743	Canola	nucleus	34.43	36.33
CDY60980	Canola	nucleus	37.38	36.31
CDY25898	Canola	nucleus	38.36	36.11
CDY18676	Canola	nucleus	37.05	35.99
CDX79698	Canola	nucleus	34.1	35.99
CDX88631	Canola	nucleus	39.02	35.95
CDY11860	Canola	nucleus	39.34	35.93
Zm00001d013164_P002	Maize	nucleus	40.98	35.71
CDY64987	Canola	nucleus	27.54	35.15
CDY52538	Canola	nucleus	40.33	33.33
CDY37840	Canola	nucleus	40.33	33.15
CDY45629	Canola	nucleus	39.67	32.88
CDY08748	Canola	nucleus	39.34	32.61
CDY50326	Canola	nucleus	32.79	29.94
CDY26977	Canola	nucleus	33.11	29.71
CDY09184	Canola	nucleus	31.48	29.18
CDY17391	Canola	nucleus	28.52	27.19
CDY57424	Canola	nucleus	27.87	26.56
CDX86430	Canola	nucleus	27.87	26.32
CDX85201	Canola	endoplasmic reticulum, vacuole	27.87	13.0
CDY40299	Canola	nucleus	1.97	3.0

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.1	GO:A0A078C2N8	EnsemblPlants:CDX69328	ProteinID:CDX69328	ProteinID:CDX69328.1
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0008150	GO:GO:0009664
GO:GO:0009987	GO:GO:0016043	EnsemblPlantsGene:GSBRNA2T00131164001	InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom
PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR10641	PANTHER:PTHR10641:SF946	InterPro:SANT/Myb	SMART:SM00717
SUPFAM:SSF46689	UniParc:UPI0004EB1537	SEG:seg	:	:	:

Description

BnaC01g01250D

Coordinates

chrLK031789:-:4177962..4179111

Molecular Weight (calculated)

35045.3 Da

IEP (calculated)

6.670

GRAVY (calculated)

-0.677

Length

305 amino acids

Sequence
(BLAST)

001: MGRAPCCDKT VVKKGPWSPE EDAMLKSYIE KHGTGNNWIA LPHKIGIKRC GKSCRLRWLN YLRPNIKHGS FTDEEDYIIC SLYITIGSRW SIIASQLPGR
101: TDNDIKNYWN TRLKKKLLSK QGKAIHQQLS LRLEPETTSK RSSFSQNQIL MFHDENAKPP LHQTLHNQMV DPSITSFAME EKRMVPVLES FSWEQNKVWL
201: DIDHDAASSS YHHHASPHLN SMTTSSSSIC TNSPLQMSHY TINDNDHGDQ EMFFMAGLEN LQDELFDEII NNNTTEFEFR GTETLNNNCL GHEINSFIDC
301: PLKDN

Best Arabidopsis Sequence Match ( AT4G37780.1 )
(BLAST)

001: MGRAPCCDKM AVKKGPWSTE EDAVLKSYIE KHGTGNNWIS LPQRIGIKRC GKSCRLRWLN YLRPNLKHGG FTDEEDYIIC SLYITIGSRW SIIASQLPGR
101: TDNDIKNYWN TRLKKKLLSK QGKAFHQQLN VKFERGTTSS SSSQNQIQIF HDENTKSNQT LYNQVVDPSM RAFAMEEQSM IKNQILEPFS WEPNKVLFDV
201: DYDAAASSYH HHASPSLNSM SSTSSIGTNN SSLQMSHYTV NHNDHDQPDM FFMDGFENFQ AELFDEIANN NTVENGFDGT EILINNNYLD HDISSFIDYP
301: LYDNE

Arabidopsis Description

MYB87Transcription factor MYB87 [Source:UniProtKB/Swiss-Prot;Acc:F4JSU0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.