Factsheet for AT4G37780.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX69328	Canola	nucleus	76.72	76.72
Bra011785.1-P	Field mustard	nucleus	75.74	75.74
TraesCS5D01G415800.1	Wheat	nucleus	38.36	37.62
TraesCS5B01G410500.1	Wheat	nucleus	38.36	37.62
TraesCS5A01G405800.1	Wheat	nucleus	38.36	37.62
HORVU5Hr1G098540.1	Barley	nucleus	38.36	37.62
Zm00001d034207_P001	Maize	nucleus	38.69	37.58
AT3G49690.1	Thale cress	nucleus	37.7	37.1
Os03t0771100-01	Rice	nucleus	39.02	37.07
EER90818	Sorghum	nucleus	39.67	37.0
Zm00001d013164_P002	Maize	nucleus	40.0	34.86
AT5G57620.1	Thale cress	nucleus	37.38	34.23
AT5G65790.1	Thale cress	nucleus	38.36	31.28
AT2G36890.2	Thale cress	nucleus	33.11	29.79
AT5G23000.1	Thale cress	nucleus	30.49	28.27
AT3G28470.1	Thale cress	nucleus	29.18	28.08
AT5G56110.1	Thale cress	nucleus	28.85	27.5

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.1	EntrezGene:829934	ProteinID:AEE86837.1	EMBL:AF062914	ArrayExpress:AT4G37780
EnsemblPlantsGene:AT4G37780	RefSeq:AT4G37780	TAIR:AT4G37780	RefSeq:AT4G37780-TAIR-G	EnsemblPlants:AT4G37780.1	TAIR:AT4G37780.1
EMBL:AY519614	ProteinID:CAB38926.1	ProteinID:CAB80443.1	EMBL:DQ446905	EMBL:DQ653253	UniProt:F4JSU0
GO:GO:0000981	GO:GO:0001135	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0006357	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009664	GO:GO:0009987	GO:GO:0016043	GO:GO:0030154	GO:GO:0043565
GO:GO:0044212	InterPro:Homeobox-like_sf	InterPro:IPR017930	Symbol:MYB87	InterPro:Myb_dom	RefSeq:NP_195492.2
PFAM:PF00249	PO:PO:0000013	PO:PO:0000036	PO:PO:0000052	PO:PO:0000056	PO:PO:0000115
PO:PO:0000332	PO:PO:0003011	PO:PO:0004536	PO:PO:0004707	PO:PO:0005660	PO:PO:0005679
PO:PO:0006016	PO:PO:0006040	PO:PO:0006325	PO:PO:0007611	PO:PO:0009005	PO:PO:0009015
PO:PO:0009025	PO:PO:0009046	PO:PO:0020030	PFscan:PS51294	PANTHER:PTHR10641	PANTHER:PTHR10641:SF946
InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689	UniParc:UPI0001505831	EMBL:Z95809	SEG:seg

Description

MYB87Transcription factor MYB87 [Source:UniProtKB/Swiss-Prot;Acc:F4JSU0]

Coordinates

chr4:-:17758232..17759746

Molecular Weight (calculated)

34967.7 Da

IEP (calculated)

5.948

GRAVY (calculated)

-0.706

Length

305 amino acids

Sequence
(BLAST)

001: MGRAPCCDKM AVKKGPWSTE EDAVLKSYIE KHGTGNNWIS LPQRIGIKRC GKSCRLRWLN YLRPNLKHGG FTDEEDYIIC SLYITIGSRW SIIASQLPGR
101: TDNDIKNYWN TRLKKKLLSK QGKAFHQQLN VKFERGTTSS SSSQNQIQIF HDENTKSNQT LYNQVVDPSM RAFAMEEQSM IKNQILEPFS WEPNKVLFDV
201: DYDAAASSYH HHASPSLNSM SSTSSIGTNN SSLQMSHYTV NHNDHDQPDM FFMDGFENFQ AELFDEIANN NTVENGFDGT EILINNNYLD HDISSFIDYP
301: LYDNE

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.