Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra020228.1-P | Field mustard | nucleus | 83.59 | 83.59 |
| CDY09184 | Canola | nucleus | 83.59 | 83.59 |
| Bra002448.1-P | Field mustard | nucleus | 82.37 | 81.14 |
| CDY50326 | Canola | nucleus | 82.07 | 80.84 |
| CDY26977 | Canola | nucleus | 79.64 | 77.06 |
| AT5G57620.1 | Thale cress | nucleus | 34.65 | 34.23 |
| AT3G49690.1 | Thale cress | nucleus | 30.7 | 32.58 |
| AT2G36890.2 | Thale cress | nucleus | 33.13 | 32.15 |
| AT4G37780.1 | Thale cress | nucleus | 28.27 | 30.49 |
| AT5G65790.1 | Thale cress | nucleus | 31.91 | 28.07 |
| AT3G28470.1 | Thale cress | nucleus | 26.44 | 27.44 |
| AT5G56110.1 | Thale cress | nucleus | 25.23 | 25.94 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.2.1 | EntrezGene:832364 | ProteinID:ABQ85336.1 | ProteinID:ABQ85337.1 | ProteinID:ABQ85338.1 |
| ProteinID:ABQ85339.1 | ProteinID:ABQ85340.1 | ProteinID:ABQ85341.1 | ProteinID:ABQ85342.1 | ProteinID:ABQ85343.1 | ProteinID:ABQ85344.1 |
| ProteinID:ABQ85345.1 | ProteinID:ABQ85346.1 | ProteinID:ABQ85347.1 | ProteinID:ABQ85348.1 | ProteinID:ABQ85349.1 | ProteinID:ABQ85350.1 |
| ProteinID:ABQ85351.1 | ProteinID:ABQ85352.1 | ProteinID:ABQ85353.1 | ProteinID:ABQ85354.1 | ProteinID:ABQ85355.1 | ProteinID:ABQ85356.1 |
| ProteinID:ABQ85357.1 | ProteinID:ABQ85358.1 | ProteinID:ABQ85359.1 | ProteinID:AED93106.1 | EMBL:AF062879 | EMBL:AK175507 |
| ArrayExpress:AT5G23000 | EnsemblPlantsGene:AT5G23000 | RefSeq:AT5G23000 | TAIR:AT5G23000 | RefSeq:AT5G23000-TAIR-G | EnsemblPlants:AT5G23000.1 |
| TAIR:AT5G23000.1 | EMBL:AY519628 | ProteinID:BAB08873.1 | ProteinID:CAC80101.1 | ProteinID:CAD31158.1 | ProteinID:CAD31159.1 |
| ProteinID:CAD31160.1 | ProteinID:CAD31161.1 | ProteinID:CAD31162.1 | ProteinID:CAD31163.1 | ProteinID:CAD31164.1 | ProteinID:CAD31165.1 |
| ProteinID:CAD31166.1 | ProteinID:CAD31167.1 | ProteinID:CAD31168.1 | ProteinID:CAD31169.1 | ProteinID:CAD31170.1 | ProteinID:CAD31171.1 |
| ProteinID:CAD31172.1 | ProteinID:CAD31173.1 | ProteinID:CAD31174.1 | ProteinID:CAD31175.1 | ProteinID:CAD31176.1 | ProteinID:CAD31177.1 |
| ProteinID:CAD31178.1 | ProteinID:CAD31179.1 | ProteinID:CAD31180.1 | ProteinID:CAD31181.1 | ProteinID:CAD31182.1 | ProteinID:CAD31183.1 |
| ProteinID:CAD31184.1 | ProteinID:CAD31185.1 | ProteinID:CAD31186.1 | ProteinID:CAD31187.1 | ProteinID:CAD31188.1 | ProteinID:CAD31189.1 |
| ProteinID:CAD31190.1 | ProteinID:CAD31191.1 | ProteinID:CAD31192.1 | ProteinID:CAD31193.1 | ProteinID:CAD31194.1 | EMBL:DQ446976 |
| GO:GO:0000981 | GO:GO:0001135 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0006357 | GO:GO:0007275 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009653 | GO:GO:0009987 | GO:GO:0030154 | GO:GO:0043565 |
| GO:GO:0044212 | GO:GO:0090506 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | RefSeq:NP_197691.1 |
| PFAM:PF00249 | PFscan:PS51294 | PANTHER:PTHR10641 | PANTHER:PTHR10641:SF928 | UniProt:Q9FG68 | Symbol:RAX1 |
| InterPro:SANT/Myb | SMART:SM00717 | SUPFAM:SSF46689 | UniParc:UPI000005E819 | SEG:seg | : |
Description
RAX1Transcription factor RAX1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FG68]
Coordinates
chr5:+:7696135..7698022
Molecular Weight (calculated)
37047.4 Da
IEP (calculated)
8.679
GRAVY (calculated)
-0.733
Length
329 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRAPCCDKT KVKRGPWSPE EDSKLRDYIE KYGNGGNWIS FPLKAGLRRC GKSCRLRWLN YLRPNIKHGD FSEEEDRIIF SLFAAIGSRW SIIAAHLPGR
101: TDNDIKNYWN TKLRKKLLSS SSDSSSSAMA SPYLNPISQD VKRPTSPTTI PSSSYNPYAE NPNQYPTKSL ISSINGFEAG DKQIISYINP NYPQDLYLSD
201: SNNNTSNANG FLLNHNMCDQ YKNHTSFSSD VNGIRSEIMM KQEEIMMMMM IDHHIDQRTK GYNGEFTQGY YNYYNGHGDL KQMISGTGTN SNINMGGSGS
301: SSSSISNLAE NKSSGSLLLE YKCLPYFYS
101: TDNDIKNYWN TKLRKKLLSS SSDSSSSAMA SPYLNPISQD VKRPTSPTTI PSSSYNPYAE NPNQYPTKSL ISSINGFEAG DKQIISYINP NYPQDLYLSD
201: SNNNTSNANG FLLNHNMCDQ YKNHTSFSSD VNGIRSEIMM KQEEIMMMMM IDHHIDQRTK GYNGEFTQGY YNYYNGHGDL KQMISGTGTN SNINMGGSGS
301: SSSSISNLAE NKSSGSLLLE YKCLPYFYS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.