Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY33205 | Canola | nucleus | 74.34 | 87.5 |
| CDY46743 | Canola | nucleus | 74.04 | 86.85 |
| Bra005234.1-P | Field mustard | nucleus | 73.45 | 86.46 |
| CDX75005 | Canola | nucleus | 73.45 | 86.46 |
| Bra023085.1-P | Field mustard | nucleus | 73.45 | 86.16 |
| CDX79698 | Canola | nucleus | 73.45 | 86.16 |
| Bra017218.1-P | Field mustard | nucleus | 70.8 | 82.76 |
| AT3G49690.1 | Thale cress | nucleus | 32.15 | 35.16 |
| AT5G57620.1 | Thale cress | nucleus | 34.22 | 34.83 |
| AT5G23000.1 | Thale cress | nucleus | 32.15 | 33.13 |
| AT4G37780.1 | Thale cress | nucleus | 29.79 | 33.11 |
| AT5G65790.1 | Thale cress | nucleus | 33.04 | 29.95 |
| AT5G56110.1 | Thale cress | nucleus | 24.78 | 26.25 |
| AT3G28470.1 | Thale cress | nucleus | 24.48 | 26.18 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.2.1 | EntrezGene:818262 | UniProt:A0A1P8B126 | ProteinID:ANM62605.1 | ArrayExpress:AT2G36890 |
| EnsemblPlantsGene:AT2G36890 | RefSeq:AT2G36890 | TAIR:AT2G36890 | RefSeq:AT2G36890-TAIR-G | EnsemblPlants:AT2G36890.2 | GO:GO:0000981 |
| GO:GO:0001135 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006351 | GO:GO:0006355 | GO:GO:0006357 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0007275 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009628 | GO:GO:0009719 | GO:GO:0009737 |
| GO:GO:0009739 | GO:GO:0009751 | GO:GO:0009753 | GO:GO:0009785 | GO:GO:0009987 | GO:GO:0030154 |
| GO:GO:0043565 | GO:GO:0044212 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | RefSeq:NP_001324751.1 |
| RefSeq:NP_181226.1 | ProteinID:OAP07955.1 | PFAM:PF00249 | PFscan:PS51294 | PANTHER:PTHR10641 | PANTHER:PTHR10641:SF654 |
| Symbol:RAX2 | InterPro:SANT/Myb | SMART:SM00717 | SUPFAM:SSF46689 | UniParc:UPI000848E972 | SEG:seg |
Description
RAX2Duplicated homeodomain-like superfamily protein [Source:TAIR;Acc:AT2G36890]
Coordinates
chr2:+:15485619..15487451
Molecular Weight (calculated)
38907.8 Da
IEP (calculated)
7.270
GRAVY (calculated)
-0.810
Length
339 amino acids
Sequence
(BLAST)
(BLAST)
001: MSLSLIITEP ENSFSFPFFS FKKQNKDIST KTLRPRETDR EMGRAPCCDK ANVKRGPWSP EEDAKLKDYI EKQGTGGNWI ALPHKAGLRR CGKSCRLRWL
101: NYLRPNIRHG DFTEEEDNII YSLFASIGSR WSVIAAHLQG RTDNDIKNYW NTKLKKKLIA TMAPPPHHHL AIATSSSSAS PSSSSHYNMI NSLLPYNPST
201: NQLLTPHQGI MMTMMGQQQQ LFYQEDMGNL VNSPNRNNLI MSHQEDNQEQ STNKGIMLLS DVRSGSSTTS TVTRVKMEHR DHDDHHHHHE EDERSMTSVV
301: MEDYGMEEIK QLISSSCTSS NNSLWFDENK TEDKFMLYY
101: NYLRPNIRHG DFTEEEDNII YSLFASIGSR WSVIAAHLQG RTDNDIKNYW NTKLKKKLIA TMAPPPHHHL AIATSSSSAS PSSSSHYNMI NSLLPYNPST
201: NQLLTPHQGI MMTMMGQQQQ LFYQEDMGNL VNSPNRNNLI MSHQEDNQEQ STNKGIMLLS DVRSGSSTTS TVTRVKMEHR DHDDHHHHHE EDERSMTSVV
301: MEDYGMEEIK QLISSSCTSS NNSLWFDENK TEDKFMLYY
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.