CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX75005	Canola	nucleus	95.83	95.83
CDX79698	Canola	nucleus	87.15	86.85
CDY46743	Canola	nucleus	86.46	86.16
CDY08749	Canola	nucleus	13.89	78.43
AT2G36890.2	Thale cress	nucleus	87.5	74.34
CDY08162	Canola	nucleus	38.54	37.0
CDY60980	Canola	nucleus	38.89	35.67
CDX69328	Canola	nucleus	37.5	35.41
CDY18676	Canola	nucleus	38.54	35.35
CDY65680	Canola	nucleus	36.11	34.67
CDX88631	Canola	nucleus	39.24	34.14
CDY25898	Canola	nucleus	38.19	33.95
CDY11860	Canola	nucleus	39.24	33.83
CDY64987	Canola	nucleus	27.78	33.47
CDY09184	Canola	nucleus	37.15	32.52
CDY26977	Canola	nucleus	37.5	31.76
CDY50326	Canola	nucleus	36.81	31.74
CDY45629	Canola	nucleus	40.28	31.52
CDY08748	Canola	nucleus	40.28	31.52
CDY52538	Canola	nucleus	40.28	31.44
CDY37840	Canola	nucleus	39.58	30.73
CDY57424	Canola	nucleus	28.47	25.62
CDY17391	Canola	nucleus	28.47	25.62
CDX86430	Canola	nucleus	28.12	25.08
CDX85201	Canola	endoplasmic reticulum, vacuole	28.12	12.39
CDY40299	Canola	nucleus	2.43	3.5

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.1	GO:A0A078H3J0	UniProt:A0A078H3J0	EnsemblPlants:CDY33205	ProteinID:CDY33205
ProteinID:CDY33205.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	EnsemblPlantsGene:GSBRNA2T00053938001
InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom	PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR10641
PANTHER:PTHR10641:SF654	InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689	UniParc:UPI0004EEEC31	SEG:seg

Description

BnaC04g08340DBnaC04g08340D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H3J0]

Coordinates

chrLK032308:+:344583..346120

Molecular Weight (calculated)

32805.7 Da

IEP (calculated)

7.028

GRAVY (calculated)

-0.770

Length

288 amino acids

Sequence
(BLAST)

001: MGRAPCCDKA NVKRGPWSPE EDAKLKDYIE KQGTGGNWIA LPHKAGLRRC GKSCRLRWLN YLRPNIRHGD FSEEEDKIIC SLFASIGSRW SVIAAHLHGR
101: TDNDIKNYWN TKLKKKLIAT MAPPPPHHLL AIASSSSSPS SSHYNMTNSL PPYNPSISTN QLITPHQEMM MTMMDQQQQQ LLYQEVMDSL VNSPNNNKLI
201: MSHQEDSQEQ STNKGIMLLS DVRSGSSTTN TVTRVKMEQH DHHHEERSME DYGMEDINHL ISSSCTSSSS NSLWFDENKT EDTFMLYY

Best Arabidopsis Sequence Match ( AT2G36890.2 )
(BLAST)

001: MSLSLIITEP ENSFSFPFFS FKKQNKDIST KTLRPRETDR EMGRAPCCDK ANVKRGPWSP EEDAKLKDYI EKQGTGGNWI ALPHKAGLRR CGKSCRLRWL
101: NYLRPNIRHG DFTEEEDNII YSLFASIGSR WSVIAAHLQG RTDNDIKNYW NTKLKKKLIA TMAPPPHHHL AIATSSSSAS PSSSSHYNMI NSLLPYNPST
201: NQLLTPHQGI MMTMMGQQQQ LFYQEDMGNL VNSPNRNNLI MSHQEDNQEQ STNKGIMLLS DVRSGSSTTS TVTRVKMEHR DHDDHHHHHE EDERSMTSVV
301: MEDYGMEEIK QLISSSCTSS NNSLWFDENK TEDKFMLYY

Arabidopsis Description

RAX2Duplicated homeodomain-like superfamily protein [Source:TAIR;Acc:AT2G36890]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.