Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra035604.1-P | Field mustard | nucleus | 100.0 | 74.69 |
| AT5G56110.1 | Thale cress | nucleus | 94.14 | 70.31 |
| CDY57424 | Canola | nucleus | 94.14 | 70.31 |
| CDY17391 | Canola | nucleus | 93.72 | 70.0 |
| VIT_19s0015g01280.t01 | Wine grape | nucleus | 73.64 | 53.33 |
| KRG98401 | Soybean | nucleus | 71.13 | 52.15 |
| KRH46482 | Soybean | nucleus | 70.71 | 52.0 |
| HORVU2Hr1G081720.2 | Barley | nucleus | 65.27 | 50.0 |
| PGSC0003DMT400022402 | Potato | nucleus | 68.2 | 49.7 |
| Solyc10g005760.1.1 | Tomato | nucleus | 69.04 | 49.11 |
| CDY08749 | Canola | nucleus | 10.46 | 49.02 |
| TraesCS2D01G331700.1 | Wheat | nucleus | 69.87 | 47.44 |
| TraesCS2B01G351000.1 | Wheat | nucleus | 69.87 | 47.44 |
| TraesCS2A01G331200.1 | Wheat | nucleus | 69.87 | 47.44 |
| Zm00001d025664_P001 | Maize | nucleus | 68.2 | 45.79 |
| EES12341 | Sorghum | nucleus | 69.04 | 44.47 |
| CDX86430 | Canola | nucleus | 41.0 | 30.34 |
| CDY46743 | Canola | nucleus | 34.31 | 28.37 |
| CDX75005 | Canola | nucleus | 33.89 | 28.12 |
| CDX79698 | Canola | nucleus | 33.89 | 28.03 |
| CDY33205 | Canola | nucleus | 33.47 | 27.78 |
| CDX69328 | Canola | nucleus | 35.15 | 27.54 |
| CDY08162 | Canola | nucleus | 34.31 | 27.33 |
| CDY65680 | Canola | nucleus | 33.47 | 26.67 |
| CDY18676 | Canola | nucleus | 33.47 | 25.48 |
| CDY60980 | Canola | nucleus | 33.47 | 25.48 |
| CDX88631 | Canola | nucleus | 34.73 | 25.08 |
| CDY25898 | Canola | nucleus | 33.89 | 25.0 |
| CDY09184 | Canola | nucleus | 34.31 | 24.92 |
| CDY11860 | Canola | nucleus | 34.73 | 24.85 |
| CDY50326 | Canola | nucleus | 34.31 | 24.55 |
| CDY26977 | Canola | nucleus | 33.89 | 23.82 |
| CDY45629 | Canola | nucleus | 34.31 | 22.28 |
| CDY52538 | Canola | nucleus | 34.31 | 22.22 |
| CDY37840 | Canola | nucleus | 34.31 | 22.1 |
| CDY08748 | Canola | nucleus | 33.89 | 22.01 |
| CDX85201 | Canola | endoplasmic reticulum, vacuole | 41.0 | 14.98 |
| CDY40299 | Canola | nucleus | 1.67 | 2.0 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.2.1 | MapMan:21.8.1.1 | GO:A0A078JHU7 | UniProt:A0A078JHU7 | EnsemblPlants:CDY64987 |
| ProteinID:CDY64987 | ProteinID:CDY64987.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| EnsemblPlantsGene:GSBRNA2T00043978001 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | PFAM:PF00249 | PFscan:PS51294 |
| PANTHER:PTHR10641 | PANTHER:PTHR10641:SF653 | InterPro:SANT/Myb | SMART:SM00717 | SUPFAM:SSF46689 | UniParc:UPI0004EE8BA4 |
| SEG:seg | : | : | : | : | : |
Description
BnaA02g35490DBnaA02g35490D protein (Fragment) [Source:UniProtKB/TrEMBL;Acc:A0A078JHU7]
Coordinates
chrLK034617:+:26388..27788
Molecular Weight (calculated)
26941.9 Da
IEP (calculated)
9.469
GRAVY (calculated)
-0.755
Length
239 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRIPCCEKE NVKRGQWTPE EDNKLASYIA QHGTRNWRLI PKNAGLQRCG KSCRLRWTNY LRPDLKHGQF SDAEEHIIVK FHSVLGNRWS LIAAQLPGRT
101: DNDVKNYWNT KLKKKLSGMG IDPVTHKPFS HLMAEITTTL NPPQVSHLAE AALGCFKDEM LHLLTKKRVD LNQINFSSPN HNHNPNNFNQ IVDNEAGKMK
201: LDNGNGIMKL WDMGNGFSYG SSSSSFGNDE RNEGSASPA
101: DNDVKNYWNT KLKKKLSGMG IDPVTHKPFS HLMAEITTTL NPPQVSHLAE AALGCFKDEM LHLLTKKRVD LNQINFSSPN HNHNPNNFNQ IVDNEAGKMK
201: LDNGNGIMKL WDMGNGFSYG SSSSSFGNDE RNEGSASPA
001: MGRIPCCEKE NVKRGQWTPE EDNKLASYIA QHGTRNWRLI PKNAGLQRCG KSCRLRWTNY LRPDLKHGQF SEAEEHIIVK FHSVLGNRWS LIAAQLPGRT
101: DNDVKNYWNT KLKKKLSGMG IDPVTHKPFS HLMAEITTTL NPPQVSHLAE AALGCFKDEM LHLLTKKRVD LNQINFSNHN PNPNNFHEIA DNEAGKIKMD
201: GLDHGNGIMK LWDMGNGFSY GSSSSSFGNE ERNDGSASPA VAAWRGHGGI RTAVAETAAA EEEERRKLKG EVVDQEEIGS EGGRGDGMTM MRNHHHHQHV
301: FNVDNVLWDL QADDLINHMV
101: DNDVKNYWNT KLKKKLSGMG IDPVTHKPFS HLMAEITTTL NPPQVSHLAE AALGCFKDEM LHLLTKKRVD LNQINFSNHN PNPNNFHEIA DNEAGKIKMD
201: GLDHGNGIMK LWDMGNGFSY GSSSSSFGNE ERNDGSASPA VAAWRGHGGI RTAVAETAAA EEEERRKLKG EVVDQEEIGS EGGRGDGMTM MRNHHHHQHV
301: FNVDNVLWDL QADDLINHMV
Arabidopsis Description
MYB80MYB80 [Source:UniProtKB/TrEMBL;Acc:A0A178UM75]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.