CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, vacuole

Predictor Summary:

plastid 3
extracellular 4
endoplasmic reticulum 5
vacuole 5
plasma membrane 4
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, vacuole
Any Predictor:	plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	vacuole

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra025337.1-P	Field mustard	nucleus	45.57	92.26
CDX86430	Canola	nucleus	45.57	92.26
AT3G28470.1	Thale cress	nucleus	38.99	80.44
Solyc03g059200.1.1	Tomato	nucleus	22.63	56.27
CDY08749	Canola	nucleus	4.28	54.9
PGSC0003DMT400022009	Potato	nucleus	22.17	49.49
KRG93460	Soybean	nucleus	24.92	47.25
KRH18536	Soybean	endoplasmic reticulum	26.91	46.93
Os03t0296000-00	Rice	nucleus	6.73	42.72
CDY64987	Canola	nucleus	14.98	41.0
GSMUA_Achr3P10060_001	Banana	nucleus	18.81	38.44
VIT_14s0066g02180.t01	Wine grape	nucleus	25.38	38.07
HORVU4Hr1G055680.1	Barley	nucleus	16.97	36.76
TraesCS4D01G192400.1	Wheat	nucleus	17.28	36.69
TraesCS4B01G191200.1	Wheat	nucleus	17.13	36.36
TraesCS4A01G113000.1	Wheat	nucleus	16.97	36.16
Zm00001d028777_P001	Maize	nucleus	16.82	34.48
OQU92760	Sorghum	nucleus	16.82	33.54
CDY57424	Canola	nucleus	15.9	32.5
CDY17391	Canola	nucleus	15.6	31.88
CDX75005	Canola	nucleus	12.69	28.82
CDY46743	Canola	nucleus	12.54	28.37
CDX79698	Canola	nucleus	12.54	28.37
CDY33205	Canola	nucleus	12.39	28.12
CDX69328	Canola	nucleus	13.0	27.87
CDY08162	Canola	nucleus	12.23	26.67
CDY60980	Canola	nucleus	12.54	26.11
CDY18676	Canola	nucleus	12.54	26.11
CDY65680	Canola	nucleus	11.93	26.0
CDY25898	Canola	nucleus	12.69	25.62
CDX88631	Canola	nucleus	12.84	25.38
CDY11860	Canola	nucleus	12.84	25.15
CDY09184	Canola	nucleus	12.54	24.92
CDY50326	Canola	nucleus	12.39	24.25
CDY26977	Canola	nucleus	12.23	23.53
CDY08748	Canola	nucleus	12.84	22.83
CDY45629	Canola	nucleus	12.84	22.83
CDY52538	Canola	nucleus	12.84	22.76
CDY37840	Canola	nucleus	12.84	22.64
CDY40299	Canola	nucleus	1.38	4.5

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.1	MapMan:18.9.1	Gene3D:2.60.120.620	GO:A0A078D7B0	EnsemblPlants:CDX85201
ProteinID:CDX85201	ProteinID:CDX85201.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003824
GO:GO:0005488	GO:GO:0005506	GO:GO:0008150	GO:GO:0008152	GO:GO:0016491	GO:GO:0016705
GO:GO:0030246	GO:GO:0031418	GO:GO:0055114	EnsemblPlantsGene:GSBRNA2T00142818001	InterPro:Homeobox-like_sf	InterPro:IPR005123
InterPro:IPR017930	InterPro:Myb_dom	InterPro:Oxoglu/Fe-dep_dioxygenase	PFAM:PF00249	PFAM:PF13640	PFscan:PS51294
PFscan:PS51471	PANTHER:PTHR10869	PANTHER:PTHR10869:SF133	InterPro:Pro_4_hyd_alph	InterPro:SANT/Myb	SMART:SM00702
SMART:SM00717	SUPFAM:SSF46689	SignalP:SignalP-noTM	UniParc:UPI0004EBA244	SEG:seg	:

Description

BnaC07g25120D

Coordinates

chrLK031841:-:222104..225599

Molecular Weight (calculated)

73370.5 Da

IEP (calculated)

8.374

GRAVY (calculated)

-0.484

Length

654 amino acids

Sequence
(BLAST)

001: MDSRNFLAFS LSLILIFPQI SSASIRFISR WSSSKREGTV IKQKTSASSL VIDPTRVTQL SWTPRVFLYK GLLTDEECDH FINLAKGKLE KSMVADNDSG
101: KSVESEVRTS SGMFLSKRQD DIVANVEAKL AAWTFLPEEN GESMQILHYE NGQKYEPHFD FFHDQVNQQL GGHRIATVLM YLSNVKKGGE TVFPMWKGAT
201: AQPKDDSWTQ CAKQGYAVKP MKGDALLFFN LHPNATTDPS SLHGSCPVVE GEKWSATRWI HVKSFERPVS RTTGCVDENE SCEKWAKAGE CKKNPAYMEP
301: SSMRSSPFIS LSLWTSLRAF ALHHSISIKP FLWHFPTASS PSLLSLNNPQ KMGRPPCCDK SNVKKGLWTA EEDAKILAYV AIHGVGNWSL IPKKAGLNRC
401: GKSCRLRWTN YLRPDLKHDS FSPQEEELII QCHRIIGSRW SSIARKLPGR TDNDVKNHWN TKLKKRLVKM GIDPVTHKPV SQVLTEFRNI SGHGNSSEPF
501: FVRNFKTEPS NNSILTQSNS AWEMMRNATS HESYHNSPMI FTHPTSSEFH FSNHSNFPLN GATSSCSSSS SSASITQPNQ GAQAFCWSDY LLSDPVLPLS
601: SQTQVVGSAA TSNLTLNQNE NFNSHSASSF VDEILDKDQE MLSQFPQLLN DFDY

Best Arabidopsis Sequence Match ( AT3G28480.1 )
(BLAST)

001: MDSRIFLAFS LCFLFTLPLI SSAPNRFLTR SSNTRDGSVI KMKTSASSFG FDPTRVTQLS WTPRVFLYEG FLSDEECDHF IKLAKGKLEK SMVADNDSGE
101: SVESEVRTSS GMFLSKRQDD IVSNVEAKLA AWTFLPEENG ESMQILHYEN GQKYEPHFDY FHDQANLELG GHRIATVLMY LSNVEKGGET VFPMWKGKAT
201: QLKDDSWTEC AKQGYAVKPR KGDALLFFNL HPNATTDSNS LHGSCPVVEG EKWSATRWIH VKSFERAFNK QSGCMDENVS CEKWAKAGEC QKNPTYMVGS
301: DKDHGYCRKS CKACSS

Arabidopsis Description

Oxoglutarate/iron-dependent oxygenase [Source:UniProtKB/TrEMBL;Acc:F4J0A6]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.